CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1444 | Y1444Y | Y2262Y | syn | taC | taT | 996 | 996 | 1 | 7049-7051 |
Details of the mutation Y1444Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 996 | 996 | All | 0.00019 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 122 | 122 | B.1.1.406 | 0.792208 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 106 | 106 | B.1.1.7 | 0.000095 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 54 | 54 | B.1.160 | 0.001684 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 43 | 43 | AY.119 | 0.001518 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 36 | 36 | AY.43 | 0.000159 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 34 | 34 | C.35 | 0.026316 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 33 | 33 | C.37 | 0.00383 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 31 | 31 | B.1.177 | 0.000408 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 22 | 22 | B.1.369 | 0.006275 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 21 | 21 | B.1.417 | 0.6 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 13 | 13 | AY.13 | 0.002093 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 13 | 13 | B.1.499 | 0.013655 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 11 | 11 | B.1.218 | 0.056701 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 11 | 11 | B.1.639 | 0.23913 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 6 | 6 | B.1.1.232 | 0.010889 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | AY.116.1 | 0.001557 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 3 | 3 | B.1.1.234 | 0.036145 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.39 | 0.015385 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1444 | Y1444Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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