CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Y1444S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31444Y1444SY2262SnonsyntActCc15130.8666677049-7051
ORF1ab/nsp31444Y1444SY2262SnonsynTAcAGc1510.06666677049-7051
ORF1ab/nsp31444Y1444SY2262SnonsynTACAGT1510.06666677049-7051

Details of the mutation Y1444S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31444Y1444StActCc1315All0.000002
ORF1ab/nsp31444Y1444STACAGT115All0
ORF1ab/nsp31444Y1444STAcAGc115All0
ORF1ab/nsp31444Y1444StActCc66B.1.1.70.000005
ORF1ab/nsp31444Y1444STAcAGc120.055556
ORF1ab/nsp31444Y1444STACAGT120.055556
ORF1ab/nsp31444Y1444StActCc11A.10.000282
ORF1ab/nsp31444Y1444StActCc11AY.1030.000006
ORF1ab/nsp31444Y1444StActCc11AY.250.000006
ORF1ab/nsp31444Y1444StActCc11AY.590.00053
ORF1ab/nsp31444Y1444StActCc11B.1.1.3980.003226
ORF1ab/nsp31444Y1444StActCc11B.1.177.870.000728
ORF1ab/nsp31444Y1444StActCc11B.1.20.000009