CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Y1427del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31427Y1427del1Y2245del1deltaCta-630.56998-7000
ORF1ab/nsp31427Y1427del1Y2245del1delTac-ac620.3333336998-7000
ORF1ab/nsp31427Y1427del1Y2245del1deltAct-c610.1666676998-7000

Details of the mutation Y1427del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31427Y1427del1taCta-36All0.000001
ORF1ab/nsp31427Y1427del1Tac-ac26All0
ORF1ab/nsp31427Y1427del1tAct-c16All0
ORF1ab/nsp31427Y1427del1tAct-c13B.1.1.70.000001
ORF1ab/nsp31427Y1427del1Tac-ac13B.1.1.70.000001
ORF1ab/nsp31427Y1427del1taCta-13B.1.1.70.000001
ORF1ab/nsp31427Y1427del1taCta-11AY.30.00001
ORF1ab/nsp31427Y1427del1Tac-ac11AY.40.000002
ORF1ab/nsp31427Y1427del1taCta-11B.1.617.10.000129