CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Y1102H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31102Y1102HY1920HnonsynTatCat3775377516023-6025

Details of the mutation Y1102H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31102Y1102HTatCat37753775All0.000722
ORF1ab/nsp31102Y1102HTatCat26152615B.1.177.450.99695
ORF1ab/nsp31102Y1102HTatCat219219P.20.040873
ORF1ab/nsp31102Y1102HTatCat197197AY.40.000307
ORF1ab/nsp31102Y1102HTatCat159159AY.440.000968
ORF1ab/nsp31102Y1102HTatCat108108B.1.1.70.000097
ORF1ab/nsp31102Y1102HTatCat7070B.1.10.00127
ORF1ab/nsp31102Y1102HTatCat6666B.1.6090.03164
ORF1ab/nsp31102Y1102HTatCat3838AY.430.000168
ORF1ab/nsp31102Y1102HTatCat3636B.1.617.20.000136
ORF1ab/nsp31102Y1102HTatCat2626AY.250.000156
ORF1ab/nsp31102Y1102HTatCat2121B.1.20.000185
ORF1ab/nsp31102Y1102HTatCat1313AY.420.000523
ORF1ab/nsp31102Y1102HTatCat1313B.1.1770.000171
ORF1ab/nsp31102Y1102HTatCat1212AY.1020.000318
ORF1ab/nsp31102Y1102HTatCat1111B.1.177.860.002018
ORF1ab/nsp31102Y1102HTatCat99B.1.2580.000599
ORF1ab/nsp31102Y1102HTatCat88AY.30.00008
ORF1ab/nsp31102Y1102HTatCat77AY.1180.000439
ORF1ab/nsp31102Y1102HTatCat77AY.1190.000247
ORF1ab/nsp31102Y1102HTatCat77AY.540.000667
ORF1ab/nsp31102Y1102HTatCat77B.10.000064
ORF1ab/nsp31102Y1102HTatCat77B.1.4280.007143
ORF1ab/nsp31102Y1102HTatCat66AY.1030.000037
ORF1ab/nsp31102Y1102HTatCat55AY.330.000334
ORF1ab/nsp31102Y1102HTatCat44B.1.5510.005161
ORF1ab/nsp31102Y1102HTatCat33AY.50.000062
ORF1ab/nsp31102Y1102HTatCat33B.1.2210.000213
ORF1ab/nsp31102Y1102HTatCat33B.1.3510.000089
ORF1ab/nsp31102Y1102HTatCat33B.1.36.290.001552
ORF1ab/nsp31102Y1102HTatCat33B.1.466.20.001174
ORF1ab/nsp31102Y1102HTatCat33B.1.5260.000071
ORF1ab/nsp31102Y1102HTatCat33B.1.6210.000266
ORF1ab/nsp31102Y1102HTatCat33B.1.6230.001609
ORF1ab/nsp31102Y1102HTatCat33C.370.000348
ORF1ab/nsp31102Y1102HTatCat33P.10.000047
ORF1ab/nsp31102Y1102HTatCat22AY.130.000322
ORF1ab/nsp31102Y1102HTatCat22AY.360.000296
ORF1ab/nsp31102Y1102HTatCat22AY.450.000243
ORF1ab/nsp31102Y1102HTatCat22AY.470.000062
ORF1ab/nsp31102Y1102HTatCat22AY.670.000929
ORF1ab/nsp31102Y1102HTatCat22AY.740.000231
ORF1ab/nsp31102Y1102HTatCat22AY.98.10.000097
ORF1ab/nsp31102Y1102HTatCat22B.1.1.1700.002494
ORF1ab/nsp31102Y1102HTatCat22B.1.1490.006849
ORF1ab/nsp31102Y1102HTatCat22B.1.1600.000062
ORF1ab/nsp31102Y1102HTatCat22B.1.258.170.000208
ORF1ab/nsp31102Y1102HTatCat22B.1.258.200.031746
ORF1ab/nsp31102Y1102HTatCat22B.1.258.40.006897
ORF1ab/nsp31102Y1102HTatCat22B.1.3490.00143
ORF1ab/nsp31102Y1102HTatCat22B.1.4160.002538
ORF1ab/nsp31102Y1102HTatCat22B.1.4290.000047
ORF1ab/nsp31102Y1102HTatCat22B.1.5610.000794
ORF1ab/nsp31102Y1102HTatCat22Q.80.00033
ORF1ab/nsp31102Y1102HTatCat11AE.80.000489
ORF1ab/nsp31102Y1102HTatCat11AY.1000.000046
ORF1ab/nsp31102Y1102HTatCat11AY.1050.000643
ORF1ab/nsp31102Y1102HTatCat11AY.1140.000231
ORF1ab/nsp31102Y1102HTatCat11AY.1200.000037
ORF1ab/nsp31102Y1102HTatCat11AY.140.000088
ORF1ab/nsp31102Y1102HTatCat11AY.220.002092
ORF1ab/nsp31102Y1102HTatCat11AY.230.00007
ORF1ab/nsp31102Y1102HTatCat11AY.3.10.000085
ORF1ab/nsp31102Y1102HTatCat11AY.390.000025
ORF1ab/nsp31102Y1102HTatCat11AY.4.20.000022
ORF1ab/nsp31102Y1102HTatCat11AY.4.2.10.000149
ORF1ab/nsp31102Y1102HTatCat11AY.4.50.000107
ORF1ab/nsp31102Y1102HTatCat11AY.5.30.000337
ORF1ab/nsp31102Y1102HTatCat11AY.60.000041
ORF1ab/nsp31102Y1102HTatCat11AY.650.000533
ORF1ab/nsp31102Y1102HTatCat11AY.7.10.000113
ORF1ab/nsp31102Y1102HTatCat11AY.700.000209
ORF1ab/nsp31102Y1102HTatCat11AY.730.000665
ORF1ab/nsp31102Y1102HTatCat11AY.9.20.000037
ORF1ab/nsp31102Y1102HTatCat11AY.99.20.000092
ORF1ab/nsp31102Y1102HTatCat11B0.000128
ORF1ab/nsp31102Y1102HTatCat11B.1.1.3060.000438
ORF1ab/nsp31102Y1102HTatCat11B.1.1.3120.001912
ORF1ab/nsp31102Y1102HTatCat11B.1.1.330.000421
ORF1ab/nsp31102Y1102HTatCat11B.1.1.5190.00004
ORF1ab/nsp31102Y1102HTatCat11B.1.110.30.000718
ORF1ab/nsp31102Y1102HTatCat11B.1.160.160.000929
ORF1ab/nsp31102Y1102HTatCat11B.1.1690.014925
ORF1ab/nsp31102Y1102HTatCat11B.1.177.210.000076
ORF1ab/nsp31102Y1102HTatCat11B.1.3560.001727
ORF1ab/nsp31102Y1102HTatCat11B.1.36.160.001425
ORF1ab/nsp31102Y1102HTatCat11B.1.4530.003236
ORF1ab/nsp31102Y1102HTatCat11B.1.5880.00091
ORF1ab/nsp31102Y1102HTatCat11B.580.010204
ORF1ab/nsp31102Y1102HTatCat11C.350.000774
ORF1ab/nsp31102Y1102HTatCat11P.1.10.000318
ORF1ab/nsp31102Y1102HTatCat11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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