CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1055 | Y1055Y | Y1873Y | syn | taC | taT | 11254 | 11254 | 1 | 5882-5884 |
Details of the mutation Y1055Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 11254 | 11254 | All | 0.002152 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1915 | 1915 | B.1.1.7 | 0.001714 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1120 | 1120 | B.1.1.216 | 0.997329 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 998 | 998 | AY.3 | 0.009926 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 493 | 493 | B.1.474 | 0.937262 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 476 | 476 | B.1 | 0.00436 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 437 | 437 | AY.4 | 0.00068 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 413 | 413 | B.1.1.214 | 0.022904 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 377 | 377 | P.1 | 0.005939 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 339 | 339 | B.1.617.2 | 0.001276 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 280 | 280 | AM.4 | 1 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 252 | 252 | AY.37 | 0.079646 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 252 | 252 | B.1.2 | 0.002219 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 248 | 248 | AY.29 | 0.003912 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 195 | 195 | B.1.177 | 0.002568 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 190 | 190 | AY.43 | 0.000842 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 189 | 189 | B.1.1 | 0.003429 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 175 | 175 | B.1.1.196 | 1 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 167 | 167 | AY.25 | 0.001004 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 156 | 156 | B.1.1.389 | 0.945455 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 108 | 108 | AY.44 | 0.000657 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 96 | 96 | B.1.438.1 | 0.010297 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 93 | 93 | AY.103 | 0.000577 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 79 | 79 | B.1.177.46 | 0.072544 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 68 | 68 | AY.102 | 0.001803 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 68 | 68 | B.1.526 | 0.001598 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 62 | 62 | AY.26 | 0.001755 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 62 | 62 | C.37 | 0.007196 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 60 | 60 | B.1.429 | 0.001412 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 56 | 56 | B.1.369 | 0.015973 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 52 | 52 | AY.47 | 0.001617 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 51 | 51 | B.1.348 | 0.927273 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 45 | 45 | B.1.1.174 | 0.152027 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 45 | 45 | B.1.1.519 | 0.001787 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 44 | 44 | B.1.351 | 0.001308 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 42 | 42 | B.1.1.222 | 0.008568 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 42 | 42 | B.1.637 | 0.003069 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 41 | 41 | B.1.616 | 1 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 37 | 37 | AY.7.1 | 0.00417 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 33 | 33 | B.1.621 | 0.002921 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 31 | 31 | B.1.160 | 0.000967 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 31 | 31 | B.1.240 | 0.006682 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 30 | 30 | AM.3 | 1 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 26 | 26 | AY.118 | 0.001629 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 25 | 25 | B.1.1.176 | 0.010984 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 24 | 24 | B.1.177.12 | 0.003641 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 23 | 23 | AY.39 | 0.000568 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 23 | 23 | B.1.427 | 0.001161 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 22 | 22 | AY.91 | 0.01607 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 22 | 22 | B.1.177.75 | 0.022893 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 22 | 22 | B.1.234 | 0.002903 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 22 | 22 | B.1.425 | 0.065868 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 21 | 21 | B.1.177.16 | 0.013953 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 21 | 21 | B.1.36 | 0.003064 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 19 | 19 | B.1.609 | 0.009108 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 18 | 18 | AY.61 | 0.001886 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 17 | 17 | B.1.1.317 | 0.006999 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 17 | 17 | P.1.7 | 0.005428 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 16 | 16 | AY.1 | 0.006332 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 16 | 16 | AY.121 | 0.002165 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 16 | 16 | B.1.237 | 0.079602 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 15 | 15 | B.1.568 | 0.016667 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 14 | 14 | B.1.1.28 | 0.004357 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 14 | 14 | B.1.389 | 0.014028 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 12 | 12 | B.1.177.60 | 0.002621 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 11 | 11 | C.18 | 0.028497 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | D.2 | 0.00075 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | P.1.8 | 0.047847 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | AM.2 | 1 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | AY.90 | 0.00616 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 9 | 9 | B | 0.00115 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 8 | 8 | AY.85 | 0.003417 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 8 | 8 | B.1.1.368 | 0.024691 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | AM.1 | 0.777778 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | B.1.157 | 0.020896 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | B.1.177.73 | 0.003964 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | B.1.603 | 0.074468 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | AY.120.1 | 0.001926 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | B.1.214.2 | 0.003597 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | B.1.573 | 0.036585 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | A.2.5.3 | 0.051546 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.1.177.15 | 0.003155 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | B.31 | 0.018657 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | P.7 | 0.021834 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.81 | 0.007968 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.177.3 | 0.030534 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.177.53 | 0.009569 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.36.16 | 0.005698 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 4 | 4 | P.4 | 0.015209 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.39.1.1 | 0.002174 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.1.261 | 0.025862 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.177.62 | 0.003576 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.201 | 0.017045 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AZ.2.1 | 0.01626 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | AZ.5 | 0.007018 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.119 | 0.021053 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.36.25 | 0.004415 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.476 | 0.2 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 2 | 2 | C.39 | 0.037736 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.114 | 0.066667 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.14 | 0.017241 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.452 | 0.111111 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.20 | 0.016949 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1055 | Y1055Y | taC | taT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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