CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1050 | Y1050Y | Y1868Y | syn | taC | taT | 21367 | 21367 | 1 | 5867-5869 |
Details of the mutation Y1050Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 21367 | 21367 | All | 0.004087 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4348 | 4348 | B.1.2 | 0.038286 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2541 | 2541 | AY.44 | 0.015466 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2392 | 2392 | B.1.1.7 | 0.002141 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2173 | 2173 | AY.4 | 0.003382 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1888 | 1888 | AY.43 | 0.008365 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1853 | 1853 | B.1.617.2 | 0.006977 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1047 | 1047 | B.1.525 | 0.118479 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 418 | 418 | AY.103 | 0.002595 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 245 | 245 | B.1.1.519 | 0.009729 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 232 | 232 | B.1 | 0.002125 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 215 | 215 | AY.46 | 0.022377 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 209 | 209 | P.1 | 0.003293 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 189 | 189 | B.1.524 | 0.265823 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 186 | 186 | B.1.177 | 0.002449 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 173 | 173 | AY.25 | 0.001041 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 170 | 170 | AY.39.1 | 0.006734 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 152 | 152 | AY.102 | 0.00403 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 140 | 140 | B.1.429 | 0.003294 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 114 | 114 | AY.39 | 0.002817 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 105 | 105 | B.1.1 | 0.001905 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 93 | 93 | AY.57 | 0.061024 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 91 | 91 | AY.3 | 0.000905 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 90 | 90 | B.1.160 | 0.002807 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 62 | 62 | B.1.621 | 0.005488 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 60 | 60 | B.1.351 | 0.001784 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 50 | 50 | P.1.15 | 0.011617 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 49 | 49 | AY.26 | 0.001387 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 48 | 48 | AY.119 | 0.001695 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 47 | 47 | AY.5.3 | 0.015857 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 45 | 45 | B.1.160.12 | 0.288462 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 42 | 42 | AY.47 | 0.001306 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 42 | 42 | B.1.596 | 0.00366 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 40 | 40 | AY.54 | 0.003814 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 40 | 40 | B.1.427 | 0.00202 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 39 | 39 | AY.9.1 | 0.003265 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 38 | 38 | B.1.258 | 0.002529 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 38 | 38 | C.37 | 0.00441 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 35 | 35 | AY.29 | 0.000552 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 34 | 34 | AY.4.2 | 0.000737 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 33 | 33 | B.1.1.384 | 0.785714 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 32 | 32 | AY.27 | 0.002071 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 31 | 31 | AY.20 | 0.001205 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 30 | 30 | Q.8 | 0.004947 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 29 | 29 | B.1.36.38 | 0.047619 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 28 | 28 | AY.116.1 | 0.00872 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 28 | 28 | AY.117 | 0.002366 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 28 | 28 | B.1.243 | 0.001948 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 24 | 24 | AY.9 | 0.001622 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 24 | 24 | C.6 | 0.888889 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 23 | 23 | AY.120 | 0.000855 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 23 | 23 | AY.23 | 0.001604 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 21 | 21 | AY.100 | 0.000966 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 21 | 21 | AY.106 | 0.007033 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 20 | 20 | AY.61 | 0.002096 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 20 | 20 | B.1.1.434 | 0.006971 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 19 | 19 | B.1.36.21 | 0.041037 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 17 | 17 | B.1.1.28 | 0.005291 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 17 | 17 | P.1.8 | 0.08134 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 16 | 16 | AY.113 | 0.002278 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 16 | 16 | B.1.564 | 0.006814 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 15 | 15 | AY.16 | 0.005695 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 15 | 15 | B | 0.001917 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 15 | 15 | B.1.36.36 | 0.009031 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 15 | 15 | D.2 | 0.001126 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 14 | 14 | B.1.1.1 | 0.004574 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 14 | 14 | B.1.609 | 0.006711 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 13 | 13 | B.1.177.81 | 0.002461 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 13 | 13 | C.16 | 0.013786 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 13 | 13 | P.1.17 | 0.002103 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 13 | 13 | R.1 | 0.00117 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | AY.46.4 | 0.001974 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | B.1.311 | 0.003295 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | B.1.320 | 0.014944 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 12 | 12 | B.1.36.29 | 0.006208 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 11 | 11 | AY.19 | 0.012543 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 11 | 11 | AY.5.4 | 0.003044 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 11 | 11 | B.1.1.266 | 0.134146 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 10 | 10 | B.1.1.409 | 0.028329 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | B.1.1.25 | 0.004548 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | B.1.1.277 | 0.00607 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | B.1.177.79 | 0.018735 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | B.1.621.1 | 0.004047 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | AY.24 | 0.003017 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | B.1.160.15 | 0.034653 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | B.1.189 | 0.030043 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 7 | 7 | Q.7 | 0.007778 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.39.2 | 0.009245 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.76 | 0.028986 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | B.1.1.348 | 0.004777 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | B.1.177.8 | 0.004515 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | B.1.453 | 0.019417 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | L.2 | 0.068182 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.21 | 0.009488 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.30 | 0.001979 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | B.1.1.174 | 0.016892 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | B.27 | 0.076923 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | N.4 | 0.021277 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.1.438 | 0.2 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.177.33 | 0.006579 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | A.2.4 | 0.010101 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AE.4 | 0.130435 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.366 | 0.047619 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.1.383 | 0.1875 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.177.89 | 0.073171 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.501 | 0.022059 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | C.26 | 0.022059 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.164 | 0.010309 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.349 | 0.020619 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.375 | 0.02381 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.506 | 0.074074 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.194 | 0.08 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.372 | 0.021978 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.378 | 0.013699 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.444 | 0.031746 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.460 | 0.035714 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | N.8 | 0.0625 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.154 | 0.04 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1050 | Y1050Y | taC | taT | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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