CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V765F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3765V765FV1583FnonsynGttTtt3014301415012-5014

Details of the mutation V765F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3765V765FGttTtt30143014All0.000576
ORF1ab/nsp3765V765FGttTtt866866B.1.1.70.000775
ORF1ab/nsp3765V765FGttTtt428428B.1.2980.904863
ORF1ab/nsp3765V765FGttTtt168168B.1.617.20.000633
ORF1ab/nsp3765V765FGttTtt167167AY.440.001016
ORF1ab/nsp3765V765FGttTtt126126B.1.2430.008768
ORF1ab/nsp3765V765FGttTtt8585AY.60.003496
ORF1ab/nsp3765V765FGttTtt8484B.1.177.210.006423
ORF1ab/nsp3765V765FGttTtt8080AY.430.000354
ORF1ab/nsp3765V765FGttTtt7979AY.40.000123
ORF1ab/nsp3765V765FGttTtt5252AY.30.000517
ORF1ab/nsp3765V765FGttTtt5252B.1.1770.000685
ORF1ab/nsp3765V765FGttTtt4949AY.1020.001299
ORF1ab/nsp3765V765FGttTtt4949AY.1030.000304
ORF1ab/nsp3765V765FGttTtt4646B.1.160.210.938776
ORF1ab/nsp3765V765FGttTtt3232B.1.20.000282
ORF1ab/nsp3765V765FGttTtt3131AY.1180.001942
ORF1ab/nsp3765V765FGttTtt3030C.36.30.017016
ORF1ab/nsp3765V765FGttTtt2929B.10.000266
ORF1ab/nsp3765V765FGttTtt2727AY.250.000162
ORF1ab/nsp3765V765FGttTtt2626AY.750.001457
ORF1ab/nsp3765V765FGttTtt2626B.1.6370.0019
ORF1ab/nsp3765V765FGttTtt2525P.10.000394
ORF1ab/nsp3765V765FGttTtt2222AY.390.000544
ORF1ab/nsp3765V765FGttTtt1919Q.70.021111
ORF1ab/nsp3765V765FGttTtt1818AY.50.000372
ORF1ab/nsp3765V765FGttTtt1616B.1.36.220.019324
ORF1ab/nsp3765V765FGttTtt1515AY.200.000583
ORF1ab/nsp3765V765FGttTtt1515AY.9.10.001256
ORF1ab/nsp3765V765FGttTtt1414AY.4.20.000304
ORF1ab/nsp3765V765FGttTtt1414B.1.4290.000329
ORF1ab/nsp3765V765FGttTtt1212B.1.258.170.001248
ORF1ab/nsp3765V765FGttTtt1111B.1.1600.000343
ORF1ab/nsp3765V765FGttTtt1010B.1.360.001459
ORF1ab/nsp3765V765FGttTtt99B.1.1.2140.000499
ORF1ab/nsp3765V765FGttTtt99B.1.1.3850.040179
ORF1ab/nsp3765V765FGttTtt88AY.980.000632
ORF1ab/nsp3765V765FGttTtt88B.1.10.000145
ORF1ab/nsp3765V765FGttTtt88B.1.1.2840.000859
ORF1ab/nsp3765V765FGttTtt88B.1.1.5190.000318
ORF1ab/nsp3765V765FGttTtt77AY.98.10.000339
ORF1ab/nsp3765V765FGttTtt77B.1.3510.000208
ORF1ab/nsp3765V765FGttTtt77B.1.4270.000353
ORF1ab/nsp3765V765FGttTtt77Q.80.001154
ORF1ab/nsp3765V765FGttTtt66AY.1200.000223
ORF1ab/nsp3765V765FGttTtt66AY.260.00017
ORF1ab/nsp3765V765FGttTtt66AY.290.000095
ORF1ab/nsp3765V765FGttTtt66AY.420.000241
ORF1ab/nsp3765V765FGttTtt66AY.46.40.000987
ORF1ab/nsp3765V765FGttTtt66B.1.1.700.002046
ORF1ab/nsp3765V765FGttTtt66B.1.5260.000141
ORF1ab/nsp3765V765FGttTtt55AY.1000.00023
ORF1ab/nsp3765V765FGttTtt55AY.120.00158
ORF1ab/nsp3765V765FGttTtt55AY.610.000524
ORF1ab/nsp3765V765FGttTtt55B.1.1.3710.052083
ORF1ab/nsp3765V765FGttTtt55B.1.438.10.000536
ORF1ab/nsp3765V765FGttTtt44AY.4.50.00043
ORF1ab/nsp3765V765FGttTtt44B.1.1.2700.041237
ORF1ab/nsp3765V765FGttTtt44B.1.1.500.002716
ORF1ab/nsp3765V765FGttTtt44B.1.5750.001214
ORF1ab/nsp3765V765FGttTtt44B.1.6210.000354
ORF1ab/nsp3765V765FGttTtt44P.1.170.000647
ORF1ab/nsp3765V765FGttTtt33AY.29.10.000662
ORF1ab/nsp3765V765FGttTtt33AY.450.000365
ORF1ab/nsp3765V765FGttTtt33AY.680.000821
ORF1ab/nsp3765V765FGttTtt33AY.700.000626
ORF1ab/nsp3765V765FGttTtt33B0.000383
ORF1ab/nsp3765V765FGttTtt33B.1.1.3180.000905
ORF1ab/nsp3765V765FGttTtt33B.1.258.140.002941
ORF1ab/nsp3765V765FGttTtt33B.1.36.80.003
ORF1ab/nsp3765V765FGttTtt33B.1.6180.012097
ORF1ab/nsp3765V765FGttTtt33P.1.70.000958
ORF1ab/nsp3765V765FGttTtt22AY.1170.000169
ORF1ab/nsp3765V765FGttTtt22AY.130.000322
ORF1ab/nsp3765V765FGttTtt22AY.160.000759
ORF1ab/nsp3765V765FGttTtt22AY.190.002281
ORF1ab/nsp3765V765FGttTtt22AY.470.000062
ORF1ab/nsp3765V765FGttTtt22AY.600.001876
ORF1ab/nsp3765V765FGttTtt22AY.7.10.000225
ORF1ab/nsp3765V765FGttTtt22AY.730.001331
ORF1ab/nsp3765V765FGttTtt22AY.9.20.000073
ORF1ab/nsp3765V765FGttTtt22AY.920.000575
ORF1ab/nsp3765V765FGttTtt22B.1.1.2790.002242
ORF1ab/nsp3765V765FGttTtt22B.1.1.280.000622
ORF1ab/nsp3765V765FGttTtt22B.1.2340.000264
ORF1ab/nsp3765V765FGttTtt22B.1.3960.001411
ORF1ab/nsp3765V765FGttTtt22B.1.5960.000174
ORF1ab/nsp3765V765FGttTtt22B.1.617.10.000258
ORF1ab/nsp3765V765FGttTtt22P.1.120.000968
ORF1ab/nsp3765V765FGttTtt11A.2.20.001689
ORF1ab/nsp3765V765FGttTtt11A.30.002096
ORF1ab/nsp3765V765FGttTtt11AY.1060.000335
ORF1ab/nsp3765V765FGttTtt11AY.1100.000113
ORF1ab/nsp3765V765FGttTtt11AY.1110.000183
ORF1ab/nsp3765V765FGttTtt11AY.16.10.00047
ORF1ab/nsp3765V765FGttTtt11AY.270.000065
ORF1ab/nsp3765V765FGttTtt11AY.310.018519
ORF1ab/nsp3765V765FGttTtt11AY.340.000097
ORF1ab/nsp3765V765FGttTtt11AY.360.000148
ORF1ab/nsp3765V765FGttTtt11AY.39.10.00004
ORF1ab/nsp3765V765FGttTtt11AY.4.30.000842
ORF1ab/nsp3765V765FGttTtt11AY.4.40.000409
ORF1ab/nsp3765V765FGttTtt11AY.460.000104
ORF1ab/nsp3765V765FGttTtt11AY.46.10.001027
ORF1ab/nsp3765V765FGttTtt11AY.46.50.000198
ORF1ab/nsp3765V765FGttTtt11AY.46.60.000072
ORF1ab/nsp3765V765FGttTtt11AY.540.000095
ORF1ab/nsp3765V765FGttTtt11AY.550.000917
ORF1ab/nsp3765V765FGttTtt11AY.690.000187
ORF1ab/nsp3765V765FGttTtt11AY.75.10.00018
ORF1ab/nsp3765V765FGttTtt11AY.80.000606
ORF1ab/nsp3765V765FGttTtt11AY.820.001357
ORF1ab/nsp3765V765FGttTtt11AY.850.000427
ORF1ab/nsp3765V765FGttTtt11AY.910.00073
ORF1ab/nsp3765V765FGttTtt11AY.940.000443
ORF1ab/nsp3765V765FGttTtt11AY.990.001049
ORF1ab/nsp3765V765FGttTtt11AY.99.20.000092
ORF1ab/nsp3765V765FGttTtt11B.1.1.1600.02381
ORF1ab/nsp3765V765FGttTtt11B.1.1.1920.002309
ORF1ab/nsp3765V765FGttTtt11B.1.1.2310.003096
ORF1ab/nsp3765V765FGttTtt11B.1.1.2690.001353
ORF1ab/nsp3765V765FGttTtt11B.1.1.3110.000358
ORF1ab/nsp3765V765FGttTtt11B.1.1.330.000421
ORF1ab/nsp3765V765FGttTtt11B.1.1.3350.012987
ORF1ab/nsp3765V765FGttTtt11B.1.1.3450.043478
ORF1ab/nsp3765V765FGttTtt11B.1.1260.001276
ORF1ab/nsp3765V765FGttTtt11B.1.1570.002985
ORF1ab/nsp3765V765FGttTtt11B.1.177.450.000381
ORF1ab/nsp3765V765FGttTtt11B.1.2060.000816
ORF1ab/nsp3765V765FGttTtt11B.1.2210.000071
ORF1ab/nsp3765V765FGttTtt11B.1.2520.006623
ORF1ab/nsp3765V765FGttTtt11B.1.3110.000275
ORF1ab/nsp3765V765FGttTtt11B.1.3400.004292
ORF1ab/nsp3765V765FGttTtt11B.1.36.290.000517
ORF1ab/nsp3765V765FGttTtt11B.1.5250.000113
ORF1ab/nsp3765V765FGttTtt11B.1.5740.002151
ORF1ab/nsp3765V765FGttTtt11B.1.5950.000261
ORF1ab/nsp3765V765FGttTtt11B.1.6260.005714
ORF1ab/nsp3765V765FGttTtt11B.150.017544
ORF1ab/nsp3765V765FGttTtt11C.300.001727
ORF1ab/nsp3765V765FGttTtt11D.20.000075
ORF1ab/nsp3765V765FGttTtt11P.1.100.000269
ORF1ab/nsp3765V765FGttTtt11P.1.140.000048
ORF1ab/nsp3765V765FGttTtt11P.30.001595
ORF1ab/nsp3765V765FGttTtt11P.40.003802
ORF1ab/nsp3765V765FGttTtt11Q.10.000126
ORF1ab/nsp3765V765FGttTtt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.