CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 527 | V527V | V1345V | syn | gtG | gtT | 11508 | 10623 | 0.923097 | 4298-4300 |
ORF1ab/nsp3 | 527 | V527V | V1345V | syn | gtG | gtC | 11508 | 740 | 0.0643031 | 4298-4300 |
ORF1ab/nsp3 | 527 | V527V | V1345V | syn | gtG | gtA | 11508 | 145 | 0.0125999 | 4298-4300 |
Details of the mutation V527V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 10623 | 11508 | All | 0.002032 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 740 | 11508 | All | 0.000142 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 145 | 11508 | All | 0.000028 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 971 | 1652 | AY.4 | 0.001511 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 678 | 1652 | AY.4 | 0.001055 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 3 | 1652 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1424 | 1511 | B.1.1.7 | 0.001275 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 86 | 1511 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 1511 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 799 | 799 | P.1.10 | 0.215306 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 740 | 769 | B.1.617.2 | 0.002786 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 27 | 769 | B.1.617.2 | 0.000102 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 2 | 769 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 680 | 680 | AY.111 | 0.124542 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 629 | 632 | AY.43 | 0.002787 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 2 | 632 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 632 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 606 | 606 | B.1.1.222 | 0.123623 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 381 | 384 | AY.25 | 0.002292 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 3 | 384 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 290 | 293 | B.1 | 0.002656 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 3 | 293 | B.1 | 0.000027 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 250 | 250 | B.1.234 | 0.032986 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 200 | 203 | AY.103 | 0.001242 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 3 | 203 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 174 | 196 | AY.98 | 0.013745 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 22 | 196 | AY.98 | 0.001738 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 178 | 178 | B.1.258 | 0.011845 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 176 | 177 | B.1.177 | 0.002317 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 177 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 162 | 165 | B.1.2 | 0.001426 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 2 | 165 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 165 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 118 | 118 | P.1.14 | 0.005641 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 116 | 117 | P.1 | 0.001827 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 117 | P.1 | 0.000016 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 103 | 111 | AY.44 | 0.000627 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 8 | 111 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 101 | 101 | B.1.1.219 | 0.505 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 97 | 97 | AY.119 | 0.003425 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 86 | 87 | AY.39 | 0.002125 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 87 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 86 | 86 | P.1.10.1 | 0.699187 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 77 | 77 | B.1.221 | 0.00547 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 73 | 75 | B.1.1 | 0.001324 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 75 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 75 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 69 | 70 | AY.102 | 0.001829 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 70 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 67 | 69 | AY.120 | 0.002491 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 2 | 69 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 68 | 68 | B.1.351.2 | 0.020575 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 60 | 60 | AY.41 | 0.017637 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 56 | 56 | B.1.36.29 | 0.028971 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 55 | 55 | AY.26 | 0.001557 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 52 | 52 | AY.4.5 | 0.00559 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 49 | 49 | AY.5 | 0.001012 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 48 | 48 | B.1.351 | 0.001427 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 47 | 47 | B.1.429 | 0.001106 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 44 | 44 | B.1.113 | 0.6875 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 39 | 43 | AY.3 | 0.000388 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 4 | 43 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 36 | 40 | B.1.1.519 | 0.00143 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 3 | 40 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 40 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 39 | 39 | B.1.1.214 | 0.002163 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 37 | 38 | AY.100 | 0.001702 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 38 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 37 | 37 | B.1.609 | 0.017737 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 30 | 33 | Q.3 | 0.004351 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 3 | 33 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 31 | 31 | AY.84 | 0.013561 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 31 | 31 | C.16 | 0.032874 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 29 | 30 | B.1.526 | 0.000682 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 30 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 30 | 30 | B.1.637 | 0.002192 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 29 | 29 | C.36.3.1 | 0.078804 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 28 | 28 | AY.29 | 0.000442 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 28 | 28 | B.1.1.269 | 0.037889 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 24 | 25 | AY.46 | 0.002498 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 25 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 25 | 25 | B.1.405 | 0.308642 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 24 | 24 | AY.6 | 0.000987 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 21 | 21 | B.1.214.2 | 0.01259 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 20 | 20 | Q.2 | 0.01227 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 17 | 17 | B.1.177.16 | 0.011296 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 16 | 16 | B.1.404 | 0.020833 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 16 | 16 | B.1.565 | 0.012966 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 15 | 15 | B.1.1.368 | 0.046296 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 8 | 15 | B.1.177.45 | 0.00305 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 15 | B.1.177.45 | 0.002669 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 14 | 15 | B.1.243 | 0.000974 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 15 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 15 | 15 | B.1.247 | 0.223881 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 14 | 14 | AY.67 | 0.0065 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 14 | 14 | AY.92 | 0.004022 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 14 | B.1.36 | 0.001897 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 14 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 13 | B.1.177.56 | 0.008678 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 13 | 13 | B.1.638 | 0.684211 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 11 | 12 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 12 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 11 | 11 | B.1.1.306 | 0.004822 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 10 | 10 | AY.110 | 0.001127 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 9 | 9 | A.23.1 | 0.006338 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 9 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 9 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 9 | 9 | B.1.177.57 | 0.002529 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 9 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 9 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | A.2.4 | 0.026936 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | AY.34.1 | 0.00408 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | B.1.1.283 | 0.186047 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | B.1.110 | 0.036199 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 8 | 8 | B.1.421 | 0.059701 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | B.1.402 | 0.068627 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.24 | 0.002586 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 6 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 6 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 6 | 6 | B.1.545 | 0.086957 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 5 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 2 | 5 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.239 | 0.006105 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.530 | 0.035714 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 4 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 4 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B.1.36.9 | 0.012862 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | B.1.620 | 0.003784 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.1.274 | 0.015152 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.453 | 0.009709 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.177.67 | 0.015267 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 2 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 2 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.17 | 0.016667 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtA | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.270 | 0.010309 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.32 | 0.027027 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | L.4 | 0.05 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | M.1 | 0.023256 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 527 | V527V | gtG | gtT | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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