CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V481V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3481V481VV1299VsyngtGgtT462943840.9470734160-4162
ORF1ab/nsp3481V481VV1299VsyngtGgtA46292130.04601434160-4162
ORF1ab/nsp3481V481VV1299VsyngtGgtC4629320.006912944160-4162

Details of the mutation V481V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3481V481VgtGgtT43844629All0.000838
ORF1ab/nsp3481V481VgtGgtA2134629All0.000041
ORF1ab/nsp3481V481VgtGgtC324629All0.000006
ORF1ab/nsp3481V481VgtGgtT937937AY.600.878987
ORF1ab/nsp3481V481VgtGgtT499523AY.430.002211
ORF1ab/nsp3481V481VgtGgtC16523AY.430.000071
ORF1ab/nsp3481V481VgtGgtA8523AY.430.000035
ORF1ab/nsp3481V481VgtGgtT454454B.1.20.003998
ORF1ab/nsp3481V481VgtGgtT373409B.1.617.20.001404
ORF1ab/nsp3481V481VgtGgtA35409B.1.617.20.000132
ORF1ab/nsp3481V481VgtGgtC1409B.1.617.20.000004
ORF1ab/nsp3481V481VgtGgtT305363B.1.1.70.000273
ORF1ab/nsp3481V481VgtGgtA56363B.1.1.70.00005
ORF1ab/nsp3481V481VgtGgtC2363B.1.1.70.000002
ORF1ab/nsp3481V481VgtGgtT229243AY.40.000356
ORF1ab/nsp3481V481VgtGgtA11243AY.40.000017
ORF1ab/nsp3481V481VgtGgtC3243AY.40.000005
ORF1ab/nsp3481V481VgtGgtT239239AY.3.10.020377
ORF1ab/nsp3481V481VgtGgtT158159AY.610.016555
ORF1ab/nsp3481V481VgtGgtA1159AY.610.000105
ORF1ab/nsp3481V481VgtGgtT7074B.10.000641
ORF1ab/nsp3481V481VgtGgtA474B.10.000037
ORF1ab/nsp3481V481VgtGgtT7171B.1.5210.353234
ORF1ab/nsp3481V481VgtGgtT5259AY.1030.000323
ORF1ab/nsp3481V481VgtGgtC459AY.1030.000025
ORF1ab/nsp3481V481VgtGgtA359AY.1030.000019
ORF1ab/nsp3481V481VgtGgtT4758AY.440.000286
ORF1ab/nsp3481V481VgtGgtA1158AY.440.000067
ORF1ab/nsp3481V481VgtGgtT5555B.1.2430.003827
ORF1ab/nsp3481V481VgtGgtT4849AY.1020.001273
ORF1ab/nsp3481V481VgtGgtA149AY.1020.000027
ORF1ab/nsp3481V481VgtGgtT4849AY.9.20.001763
ORF1ab/nsp3481V481VgtGgtA149AY.9.20.000037
ORF1ab/nsp3481V481VgtGgtT4748B.1.4270.002373
ORF1ab/nsp3481V481VgtGgtA148B.1.4270.00005
ORF1ab/nsp3481V481VgtGgtT4545AY.75.10.008114
ORF1ab/nsp3481V481VgtGgtT3434B.1.1.2160.030276
ORF1ab/nsp3481V481VgtGgtT2732P.10.000425
ORF1ab/nsp3481V481VgtGgtA532P.10.000079
ORF1ab/nsp3481V481VgtGgtT3232R.10.00288
ORF1ab/nsp3481V481VgtGgtT2829AY.30.000278
ORF1ab/nsp3481V481VgtGgtA129AY.30.00001
ORF1ab/nsp3481V481VgtGgtT2829AY.390.000692
ORF1ab/nsp3481V481VgtGgtC129AY.390.000025
ORF1ab/nsp3481V481VgtGgtT2727B.1.177.40.005699
ORF1ab/nsp3481V481VgtGgtT2425AY.330.001603
ORF1ab/nsp3481V481VgtGgtC125AY.330.000067
ORF1ab/nsp3481V481VgtGgtT2323B.1.1.2190.115
ORF1ab/nsp3481V481VgtGgtT2222AY.90.001487
ORF1ab/nsp3481V481VgtGgtT2020AJ.10.909091
ORF1ab/nsp3481V481VgtGgtA1919AY.1130.002705
ORF1ab/nsp3481V481VgtGgtT1519AY.250.00009
ORF1ab/nsp3481V481VgtGgtA419AY.250.000024
ORF1ab/nsp3481V481VgtGgtT1319AY.260.000368
ORF1ab/nsp3481V481VgtGgtA619AY.260.00017
ORF1ab/nsp3481V481VgtGgtT1415AY.980.001106
ORF1ab/nsp3481V481VgtGgtA115AY.980.000079
ORF1ab/nsp3481V481VgtGgtT1313AY.470.000404
ORF1ab/nsp3481V481VgtGgtT1112AY.1190.000388
ORF1ab/nsp3481V481VgtGgtA112AY.1190.000035
ORF1ab/nsp3481V481VgtGgtT912AY.200.00035
ORF1ab/nsp3481V481VgtGgtA212AY.200.000078
ORF1ab/nsp3481V481VgtGgtC112AY.200.000039
ORF1ab/nsp3481V481VgtGgtT1212B.1.1.3710.125
ORF1ab/nsp3481V481VgtGgtT1111AY.4.2.10.001639
ORF1ab/nsp3481V481VgtGgtT911B.1.10.000163
ORF1ab/nsp3481V481VgtGgtA111B.1.10.000018
ORF1ab/nsp3481V481VgtGgtC111B.1.10.000018
ORF1ab/nsp3481V481VgtGgtT1011B.1.1770.000132
ORF1ab/nsp3481V481VgtGgtA111B.1.1770.000013
ORF1ab/nsp3481V481VgtGgtT1111B.1.230.066667
ORF1ab/nsp3481V481VgtGgtT1111B.1.5750.003337
ORF1ab/nsp3481V481VgtGgtT1010AY.39.10.000396
ORF1ab/nsp3481V481VgtGgtT1010AY.480.004651
ORF1ab/nsp3481V481VgtGgtT1010AY.550.009174
ORF1ab/nsp3481V481VgtGgtT1010AY.650.00533
ORF1ab/nsp3481V481VgtGgtT99AY.750.000504
ORF1ab/nsp3481V481VgtGgtT89B.1.1.5190.000318
ORF1ab/nsp3481V481VgtGgtA19B.1.1.5190.00004
ORF1ab/nsp3481V481VgtGgtT88AY.130.001288
ORF1ab/nsp3481V481VgtGgtA88AY.360.001186
ORF1ab/nsp3481V481VgtGgtT78AY.46.40.001152
ORF1ab/nsp3481V481VgtGgtA18AY.46.40.000165
ORF1ab/nsp3481V481VgtGgtT88B.1.5770.005498
ORF1ab/nsp3481V481VgtGgtT77AY.16.10.003289
ORF1ab/nsp3481V481VgtGgtA47B.1.1.2220.000816
ORF1ab/nsp3481V481VgtGgtT37B.1.1.2220.000612
ORF1ab/nsp3481V481VgtGgtT77P.20.001306
ORF1ab/nsp3481V481VgtGgtT66AY.420.000241
ORF1ab/nsp3481V481VgtGgtT66AY.60.000247
ORF1ab/nsp3481V481VgtGgtT66B.1.4290.000141
ORF1ab/nsp3481V481VgtGgtT66B.1.5690.086957
ORF1ab/nsp3481V481VgtGgtT66B.1.5960.000523
ORF1ab/nsp3481V481VgtGgtT66C.370.000696
ORF1ab/nsp3481V481VgtGgtT45AY.1170.000338
ORF1ab/nsp3481V481VgtGgtA15AY.1170.000085
ORF1ab/nsp3481V481VgtGgtT35AY.230.000209
ORF1ab/nsp3481V481VgtGgtA25AY.230.000139
ORF1ab/nsp3481V481VgtGgtT55AY.240.002155
ORF1ab/nsp3481V481VgtGgtT45AY.50.000083
ORF1ab/nsp3481V481VgtGgtA15AY.50.000021
ORF1ab/nsp3481V481VgtGgtT55B.1.5260.000118
ORF1ab/nsp3481V481VgtGgtT44AY.1000.000184
ORF1ab/nsp3481V481VgtGgtA34AY.1050.001929
ORF1ab/nsp3481V481VgtGgtT14AY.1050.000643
ORF1ab/nsp3481V481VgtGgtT34AY.46.10.00308
ORF1ab/nsp3481V481VgtGgtA14AY.46.10.001027
ORF1ab/nsp3481V481VgtGgtT44AY.620.001743
ORF1ab/nsp3481V481VgtGgtT44AY.9.10.000335
ORF1ab/nsp3481V481VgtGgtT44AY.98.10.000194
ORF1ab/nsp3481V481VgtGgtT44B.1.1.5230.00625
ORF1ab/nsp3481V481VgtGgtT23AY.460.000208
ORF1ab/nsp3481V481VgtGgtA13AY.460.000104
ORF1ab/nsp3481V481VgtGgtT33AY.850.001282
ORF1ab/nsp3481V481VgtGgtT33B.1.258.170.000312
ORF1ab/nsp3481V481VgtGgtA23B.1.3670.001585
ORF1ab/nsp3481V481VgtGgtT13B.1.3670.000792
ORF1ab/nsp3481V481VgtGgtT33B.1.6320.020134
ORF1ab/nsp3481V481VgtGgtT33Q.40.001364
ORF1ab/nsp3481V481VgtGgtT120.055556
ORF1ab/nsp3481V481VgtGgtA120.055556
ORF1ab/nsp3481V481VgtGgtT22AY.1060.00067
ORF1ab/nsp3481V481VgtGgtT22AY.1110.000366
ORF1ab/nsp3481V481VgtGgtA12AY.340.000097
ORF1ab/nsp3481V481VgtGgtT12AY.340.000097
ORF1ab/nsp3481V481VgtGgtT22AY.34.10.00102
ORF1ab/nsp3481V481VgtGgtT22AY.450.000243
ORF1ab/nsp3481V481VgtGgtA12AY.46.50.000198
ORF1ab/nsp3481V481VgtGgtT12AY.46.50.000198
ORF1ab/nsp3481V481VgtGgtT22AY.5.40.000553
ORF1ab/nsp3481V481VgtGgtT22AY.500.001599
ORF1ab/nsp3481V481VgtGgtT22AY.670.000929
ORF1ab/nsp3481V481VgtGgtT22AY.680.000547
ORF1ab/nsp3481V481VgtGgtT22AY.710.00095
ORF1ab/nsp3481V481VgtGgtT22AY.730.001331
ORF1ab/nsp3481V481VgtGgtA12AY.930.000273
ORF1ab/nsp3481V481VgtGgtT12AY.930.000273
ORF1ab/nsp3481V481VgtGgtT22AY.950.001522
ORF1ab/nsp3481V481VgtGgtT22B0.000256
ORF1ab/nsp3481V481VgtGgtT22B.1.2340.000264
ORF1ab/nsp3481V481VgtGgtT22B.1.258.30.00335
ORF1ab/nsp3481V481VgtGgtT22B.1.3110.000549
ORF1ab/nsp3481V481VgtGgtT22B.1.36.80.002
ORF1ab/nsp3481V481VgtGgtC22B.1.3690.00057
ORF1ab/nsp3481V481VgtGgtT22B.1.5610.000794
ORF1ab/nsp3481V481VgtGgtA22B.1.5630.033898
ORF1ab/nsp3481V481VgtGgtT22B.1.5950.000522
ORF1ab/nsp3481V481VgtGgtT22B.1.617.10.000258
ORF1ab/nsp3481V481VgtGgtT22D.20.00015
ORF1ab/nsp3481V481VgtGgtT11A.2.50.000499
ORF1ab/nsp3481V481VgtGgtT11A.23.10.000704
ORF1ab/nsp3481V481VgtGgtT11A.270.001656
ORF1ab/nsp3481V481VgtGgtT11AD.20.000219
ORF1ab/nsp3481V481VgtGgtT11AY.10.000396
ORF1ab/nsp3481V481VgtGgtA11AY.1140.000231
ORF1ab/nsp3481V481VgtGgtT11AY.1180.000063
ORF1ab/nsp3481V481VgtGgtT11AY.120.000316
ORF1ab/nsp3481V481VgtGgtA11AY.120.10.000321
ORF1ab/nsp3481V481VgtGgtT11AY.120.2.10.000498
ORF1ab/nsp3481V481VgtGgtT11AY.1210.000135
ORF1ab/nsp3481V481VgtGgtT11AY.140.000088
ORF1ab/nsp3481V481VgtGgtT11AY.170.008197
ORF1ab/nsp3481V481VgtGgtA11AY.270.000065
ORF1ab/nsp3481V481VgtGgtA11AY.300.000396
ORF1ab/nsp3481V481VgtGgtT11AY.350.000233
ORF1ab/nsp3481V481VgtGgtT11AY.380.000499
ORF1ab/nsp3481V481VgtGgtT11AY.4.20.000022
ORF1ab/nsp3481V481VgtGgtT11AY.4.50.000107
ORF1ab/nsp3481V481VgtGgtT11AY.46.20.000635
ORF1ab/nsp3481V481VgtGgtA11AY.46.60.000072
ORF1ab/nsp3481V481VgtGgtT11AY.520.000814
ORF1ab/nsp3481V481VgtGgtT11AY.540.000095
ORF1ab/nsp3481V481VgtGgtT11AY.580.000907
ORF1ab/nsp3481V481VgtGgtT11AY.640.000595
ORF1ab/nsp3481V481VgtGgtT11AY.7.20.000559
ORF1ab/nsp3481V481VgtGgtT11AY.700.000209
ORF1ab/nsp3481V481VgtGgtT11AY.790.001211
ORF1ab/nsp3481V481VgtGgtT11AY.870.000833
ORF1ab/nsp3481V481VgtGgtT11AY.880.000884
ORF1ab/nsp3481V481VgtGgtT11AY.970.001701
ORF1ab/nsp3481V481VgtGgtT11AY.99.20.000092
ORF1ab/nsp3481V481VgtGgtT11B.1.1.250.000569
ORF1ab/nsp3481V481VgtGgtT11B.1.1.260.005236
ORF1ab/nsp3481V481VgtGgtT11B.1.1.280.000311
ORF1ab/nsp3481V481VgtGgtA11B.1.1.3030.002762
ORF1ab/nsp3481V481VgtGgtT11B.1.1.3060.000438
ORF1ab/nsp3481V481VgtGgtT11B.1.1.3330.001076
ORF1ab/nsp3481V481VgtGgtT11B.1.1.3350.012987
ORF1ab/nsp3481V481VgtGgtT11B.1.1.370.000193
ORF1ab/nsp3481V481VgtGgtT11B.1.1.5210.005348
ORF1ab/nsp3481V481VgtGgtT11B.1.1.5250.005464
ORF1ab/nsp3481V481VgtGgtT11B.1.177.210.000076
ORF1ab/nsp3481V481VgtGgtT11B.1.177.600.000218
ORF1ab/nsp3481V481VgtGgtT11B.1.177.730.000566
ORF1ab/nsp3481V481VgtGgtT11B.1.2100.002132
ORF1ab/nsp3481V481VgtGgtT11B.1.2210.000071
ORF1ab/nsp3481V481VgtGgtT11B.1.2400.000216
ORF1ab/nsp3481V481VgtGgtT11B.1.2410.000812
ORF1ab/nsp3481V481VgtGgtT11B.1.2580.000067
ORF1ab/nsp3481V481VgtGgtT11B.1.2800.007143
ORF1ab/nsp3481V481VgtGgtT11B.1.351.30.000876
ORF1ab/nsp3481V481VgtGgtT11B.1.36.10.00114
ORF1ab/nsp3481V481VgtGgtT11B.1.36.290.000517
ORF1ab/nsp3481V481VgtGgtT11B.1.3960.000706
ORF1ab/nsp3481V481VgtGgtT11B.1.3970.004854
ORF1ab/nsp3481V481VgtGgtT11B.1.4520.013699
ORF1ab/nsp3481V481VgtGgtA11B.1.4590.004082
ORF1ab/nsp3481V481VgtGgtA11B.1.4700.001404
ORF1ab/nsp3481V481VgtGgtT11B.1.5400.009709
ORF1ab/nsp3481V481VgtGgtT11B.1.5580.004566
ORF1ab/nsp3481V481VgtGgtT11B.1.5820.000491
ORF1ab/nsp3481V481VgtGgtT11B.1.6210.000089
ORF1ab/nsp3481V481VgtGgtT11B.1.621.10.000506
ORF1ab/nsp3481V481VgtGgtA11B.1.6230.000536
ORF1ab/nsp3481V481VgtGgtT11B.1.6280.000352
ORF1ab/nsp3481V481VgtGgtT11B.1.90.006173
ORF1ab/nsp3481V481VgtGgtT11B.6.60.000889
ORF1ab/nsp3481V481VgtGgtT11C.360.000911
ORF1ab/nsp3481V481VgtGgtT11C.36.30.000567
ORF1ab/nsp3481V481VgtGgtT11N.40.004255
ORF1ab/nsp3481V481VgtGgtT11P.1.10.000318
ORF1ab/nsp3481V481VgtGgtT11P.1.150.000232
ORF1ab/nsp3481V481VgtGgtT11P.1.20.001156
ORF1ab/nsp3481V481VgtGgtT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.