CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V473F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3473V473FV1291FnonsynGttTtt139711397114136-4138

Details of the mutation V473F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3473V473FGttTtt1397113971All0.002672
ORF1ab/nsp3473V473FGttTtt1074110741B.1.1.70.009616
ORF1ab/nsp3473V473FGttTtt16551655B.1.36.360.996388
ORF1ab/nsp3473V473FGttTtt305305B.1.1770.004016
ORF1ab/nsp3473V473FGttTtt277277AY.40.000431
ORF1ab/nsp3473V473FGttTtt111111Q.80.018305
ORF1ab/nsp3473V473FGttTtt105105AY.440.000639
ORF1ab/nsp3473V473FGttTtt7979B.10.000724
ORF1ab/nsp3473V473FGttTtt7676AY.430.000337
ORF1ab/nsp3473V473FGttTtt6161AY.250.000367
ORF1ab/nsp3473V473FGttTtt5555AY.200.002138
ORF1ab/nsp3473V473FGttTtt4848B.1.617.20.000181
ORF1ab/nsp3473V473FGttTtt4040Q.10.005053
ORF1ab/nsp3473V473FGttTtt2929B.1.10.000526
ORF1ab/nsp3473V473FGttTtt2727AY.470.00084
ORF1ab/nsp3473V473FGttTtt2727B.1.20.000238
ORF1ab/nsp3473V473FGttTtt2424B.1.4290.000565
ORF1ab/nsp3473V473FGttTtt2121AY.1030.00013
ORF1ab/nsp3473V473FGttTtt1717B.1.3510.000505
ORF1ab/nsp3473V473FGttTtt1212AY.390.000297
ORF1ab/nsp3473V473FGttTtt1212B.1.1.4160.01086
ORF1ab/nsp3473V473FGttTtt1111B.1.1.1520.44
ORF1ab/nsp3473V473FGttTtt1111P.10.000173
ORF1ab/nsp3473V473FGttTtt99AY.50.000186
ORF1ab/nsp3473V473FGttTtt77AY.230.000488
ORF1ab/nsp3473V473FGttTtt77AY.4.20.000152
ORF1ab/nsp3473V473FGttTtt77B.1.360.001021
ORF1ab/nsp3473V473FGttTtt66B.1.2390.007326
ORF1ab/nsp3473V473FGttTtt55AY.260.000142
ORF1ab/nsp3473V473FGttTtt55B.1.416.10.007812
ORF1ab/nsp3473V473FGttTtt55B.1.5260.000118
ORF1ab/nsp3473V473FGttTtt55B.1.5960.000436
ORF1ab/nsp3473V473FGttTtt55P.1.140.000239
ORF1ab/nsp3473V473FGttTtt44AU.10.005063
ORF1ab/nsp3473V473FGttTtt44AY.140.000352
ORF1ab/nsp3473V473FGttTtt44AY.330.000267
ORF1ab/nsp3473V473FGttTtt44AY.9.20.000147
ORF1ab/nsp3473V473FGttTtt44AY.98.10.000194
ORF1ab/nsp3473V473FGttTtt44B.1.1.5190.000159
ORF1ab/nsp3473V473FGttTtt44B.1.4270.000202
ORF1ab/nsp3473V473FGttTtt44B.1.5610.001588
ORF1ab/nsp3473V473FGttTtt33AY.1000.000138
ORF1ab/nsp3473V473FGttTtt33AY.1020.00008
ORF1ab/nsp3473V473FGttTtt33AY.1190.000106
ORF1ab/nsp3473V473FGttTtt33AY.270.000194
ORF1ab/nsp3473V473FGttTtt33AY.290.000047
ORF1ab/nsp3473V473FGttTtt33AY.46.60.000217
ORF1ab/nsp3473V473FGttTtt33AY.60.000123
ORF1ab/nsp3473V473FGttTtt33B.1.1600.000094
ORF1ab/nsp3473V473FGttTtt33D.20.000225
ORF1ab/nsp3473V473FGttTtt33Q.30.000435
ORF1ab/nsp3473V473FGttTtt22AY.160.000759
ORF1ab/nsp3473V473FGttTtt22AY.30.00002
ORF1ab/nsp3473V473FGttTtt22AY.39.10.000079
ORF1ab/nsp3473V473FGttTtt22AY.450.000243
ORF1ab/nsp3473V473FGttTtt22AY.460.000208
ORF1ab/nsp3473V473FGttTtt22AY.46.40.000329
ORF1ab/nsp3473V473FGttTtt22AY.550.001835
ORF1ab/nsp3473V473FGttTtt22AY.900.001369
ORF1ab/nsp3473V473FGttTtt22AY.940.000885
ORF1ab/nsp3473V473FGttTtt22AY.980.000158
ORF1ab/nsp3473V473FGttTtt22B.1.1.40.005952
ORF1ab/nsp3473V473FGttTtt22B.1.177.210.000153
ORF1ab/nsp3473V473FGttTtt22B.1.177.330.003289
ORF1ab/nsp3473V473FGttTtt22B.1.177.40.000422
ORF1ab/nsp3473V473FGttTtt22B.1.177.810.000379
ORF1ab/nsp3473V473FGttTtt22B.1.2430.000139
ORF1ab/nsp3473V473FGttTtt22B.1.351.20.000605
ORF1ab/nsp3473V473FGttTtt22B.1.4530.006472
ORF1ab/nsp3473V473FGttTtt22B.1.466.20.000782
ORF1ab/nsp3473V473FGttTtt22B.1.6190.001742
ORF1ab/nsp3473V473FGttTtt11A.10.000282
ORF1ab/nsp3473V473FGttTtt11A.190.009434
ORF1ab/nsp3473V473FGttTtt11A.2.20.001689
ORF1ab/nsp3473V473FGttTtt11A.2.50.000499
ORF1ab/nsp3473V473FGttTtt11AD.20.000219
ORF1ab/nsp3473V473FGttTtt11AY.1130.000142
ORF1ab/nsp3473V473FGttTtt11AY.320.000532
ORF1ab/nsp3473V473FGttTtt11AY.340.000097
ORF1ab/nsp3473V473FGttTtt11AY.34.10.00051
ORF1ab/nsp3473V473FGttTtt11AY.4.50.000107
ORF1ab/nsp3473V473FGttTtt11AY.420.00004
ORF1ab/nsp3473V473FGttTtt11AY.46.10.001027
ORF1ab/nsp3473V473FGttTtt11AY.480.000465
ORF1ab/nsp3473V473FGttTtt11AY.530.000288
ORF1ab/nsp3473V473FGttTtt11AY.610.000105
ORF1ab/nsp3473V473FGttTtt11AY.660.00107
ORF1ab/nsp3473V473FGttTtt11AY.70.000196
ORF1ab/nsp3473V473FGttTtt11AY.7.10.000113
ORF1ab/nsp3473V473FGttTtt11AY.840.000437
ORF1ab/nsp3473V473FGttTtt11AY.850.000427
ORF1ab/nsp3473V473FGttTtt11AY.860.00083
ORF1ab/nsp3473V473FGttTtt11B.1.1.1640.005155
ORF1ab/nsp3473V473FGttTtt11B.1.1.2200.001859
ORF1ab/nsp3473V473FGttTtt11B.1.1.2300.009174
ORF1ab/nsp3473V473FGttTtt11B.1.1.2770.000759
ORF1ab/nsp3473V473FGttTtt11B.1.1.280.000311
ORF1ab/nsp3473V473FGttTtt11B.1.1.3260.001761
ORF1ab/nsp3473V473FGttTtt11B.1.1.3330.001076
ORF1ab/nsp3473V473FGttTtt11B.1.1.370.000193
ORF1ab/nsp3473V473FGttTtt11B.1.1.5250.005464
ORF1ab/nsp3473V473FGttTtt11B.1.1.700.000341
ORF1ab/nsp3473V473FGttTtt11B.1.1700.00431
ORF1ab/nsp3473V473FGttTtt11B.1.177.160.000664
ORF1ab/nsp3473V473FGttTtt11B.1.177.170.000821
ORF1ab/nsp3473V473FGttTtt11B.1.177.570.000281
ORF1ab/nsp3473V473FGttTtt11B.1.177.730.000566
ORF1ab/nsp3473V473FGttTtt11B.1.177.80.000752
ORF1ab/nsp3473V473FGttTtt11B.1.177.800.001912
ORF1ab/nsp3473V473FGttTtt11B.1.177.840.006667
ORF1ab/nsp3473V473FGttTtt11B.1.214.30.007143
ORF1ab/nsp3473V473FGttTtt11B.1.2370.004975
ORF1ab/nsp3473V473FGttTtt11B.1.2400.000216
ORF1ab/nsp3473V473FGttTtt11B.1.2600.003344
ORF1ab/nsp3473V473FGttTtt11B.1.36.10.00114
ORF1ab/nsp3473V473FGttTtt11B.1.36.220.001208
ORF1ab/nsp3473V473FGttTtt11B.1.3620.001541
ORF1ab/nsp3473V473FGttTtt11B.1.3950.007042
ORF1ab/nsp3473V473FGttTtt11B.1.5240.001406
ORF1ab/nsp3473V473FGttTtt11B.1.5250.000113
ORF1ab/nsp3473V473FGttTtt11B.1.5600.00463
ORF1ab/nsp3473V473FGttTtt11B.1.5800.004065
ORF1ab/nsp3473V473FGttTtt11B.1.5810.009434
ORF1ab/nsp3473V473FGttTtt11B.1.6120.002653
ORF1ab/nsp3473V473FGttTtt11B.1.617.10.000129
ORF1ab/nsp3473V473FGttTtt11B.1.6210.000089
ORF1ab/nsp3473V473FGttTtt11B.1.6340.003425
ORF1ab/nsp3473V473FGttTtt11B.1.6370.000073
ORF1ab/nsp3473V473FGttTtt11B.230.002924
ORF1ab/nsp3473V473FGttTtt11N.40.004255
ORF1ab/nsp3473V473FGttTtt11P.1.10.000318
ORF1ab/nsp3473V473FGttTtt11P.1.150.000232
ORF1ab/nsp3473V473FGttTtt11P.30.001595
ORF1ab/nsp3473V473FGttTtt11Q.40.000455
ORF1ab/nsp3473V473FGttTtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.