CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V267F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3267V267FV1085FnonsynGttTtt1163116313518-3520

Details of the mutation V267F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3267V267FGttTtt11631163All0.000222
ORF1ab/nsp3267V267FGttTtt581581AY.40.000904
ORF1ab/nsp3267V267FGttTtt181181B.10.001658
ORF1ab/nsp3267V267FGttTtt6363B.1.1.70.000056
ORF1ab/nsp3267V267FGttTtt3737AY.250.000223
ORF1ab/nsp3267V267FGttTtt2323B.1.20.000203
ORF1ab/nsp3267V267FGttTtt2323B.1.617.20.000087
ORF1ab/nsp3267V267FGttTtt2121AY.430.000093
ORF1ab/nsp3267V267FGttTtt1818B.1.1.2410.037267
ORF1ab/nsp3267V267FGttTtt1515AY.930.004096
ORF1ab/nsp3267V267FGttTtt1414B.1.177.210.001071
ORF1ab/nsp3267V267FGttTtt1212B.1.3510.000357
ORF1ab/nsp3267V267FGttTtt1010B.1.177.810.001893
ORF1ab/nsp3267V267FGttTtt99AY.30.00009
ORF1ab/nsp3267V267FGttTtt88AY.440.000049
ORF1ab/nsp3267V267FGttTtt77AY.1030.000043
ORF1ab/nsp3267V267FGttTtt77B.1.1600.000218
ORF1ab/nsp3267V267FGttTtt66AY.1180.000376
ORF1ab/nsp3267V267FGttTtt66C.370.000696
ORF1ab/nsp3267V267FGttTtt55AY.39.10.000198
ORF1ab/nsp3267V267FGttTtt55AY.90.000338
ORF1ab/nsp3267V267FGttTtt55B0.000639
ORF1ab/nsp3267V267FGttTtt55B.1.36.310.008757
ORF1ab/nsp3267V267FGttTtt44B.1.5450.057971
ORF1ab/nsp3267V267FGttTtt33AY.270.000194
ORF1ab/nsp3267V267FGttTtt33AY.450.000365
ORF1ab/nsp3267V267FGttTtt33B.1.1.2220.000612
ORF1ab/nsp3267V267FGttTtt33B.1.2340.000396
ORF1ab/nsp3267V267FGttTtt33B.1.4270.000151
ORF1ab/nsp3267V267FGttTtt33B.1.4290.000071
ORF1ab/nsp3267V267FGttTtt33B.1.6280.001057
ORF1ab/nsp3267V267FGttTtt33P.10.000047
ORF1ab/nsp3267V267FGttTtt22AY.230.000139
ORF1ab/nsp3267V267FGttTtt22AY.290.000032
ORF1ab/nsp3267V267FGttTtt22AY.390.000049
ORF1ab/nsp3267V267FGttTtt22AY.420.00008
ORF1ab/nsp3267V267FGttTtt22AY.870.001665
ORF1ab/nsp3267V267FGttTtt22AY.9.10.000167
ORF1ab/nsp3267V267FGttTtt22B.1.10.000036
ORF1ab/nsp3267V267FGttTtt22B.1.1371
ORF1ab/nsp3267V267FGttTtt22B.1.1570.00597
ORF1ab/nsp3267V267FGttTtt22B.1.466.20.000782
ORF1ab/nsp3267V267FGttTtt22B.1.5950.000522
ORF1ab/nsp3267V267FGttTtt22D.20.00015
ORF1ab/nsp3267V267FGttTtt22N.60.014184
ORF1ab/nsp3267V267FGttTtt22P.1.140.000096
ORF1ab/nsp3267V267FGttTtt11A.20.000662
ORF1ab/nsp3267V267FGttTtt11AY.1000.000046
ORF1ab/nsp3267V267FGttTtt11AY.1020.000027
ORF1ab/nsp3267V267FGttTtt11AY.1170.000085
ORF1ab/nsp3267V267FGttTtt11AY.130.000161
ORF1ab/nsp3267V267FGttTtt11AY.260.000028
ORF1ab/nsp3267V267FGttTtt11AY.3.10.000085
ORF1ab/nsp3267V267FGttTtt11AY.300.000396
ORF1ab/nsp3267V267FGttTtt11AY.340.000097
ORF1ab/nsp3267V267FGttTtt11AY.4.20.000022
ORF1ab/nsp3267V267FGttTtt11AY.460.000104
ORF1ab/nsp3267V267FGttTtt11AY.46.60.000072
ORF1ab/nsp3267V267FGttTtt11AY.470.000031
ORF1ab/nsp3267V267FGttTtt11AY.50.000021
ORF1ab/nsp3267V267FGttTtt11AY.60.000041
ORF1ab/nsp3267V267FGttTtt11AY.620.000436
ORF1ab/nsp3267V267FGttTtt11AY.75.10.00018
ORF1ab/nsp3267V267FGttTtt11AY.770.001127
ORF1ab/nsp3267V267FGttTtt11AY.920.000287
ORF1ab/nsp3267V267FGttTtt11AY.950.000761
ORF1ab/nsp3267V267FGttTtt11AZ.20.000821
ORF1ab/nsp3267V267FGttTtt11B.1.1.10.000327
ORF1ab/nsp3267V267FGttTtt11B.1.1.4160.000905
ORF1ab/nsp3267V267FGttTtt11B.1.1.50.008333
ORF1ab/nsp3267V267FGttTtt11B.1.160.270.015152
ORF1ab/nsp3267V267FGttTtt11B.1.1770.000013
ORF1ab/nsp3267V267FGttTtt11B.1.177.160.000664
ORF1ab/nsp3267V267FGttTtt11B.1.177.60.000977
ORF1ab/nsp3267V267FGttTtt11B.1.177.820.000477
ORF1ab/nsp3267V267FGttTtt11B.1.2210.000071
ORF1ab/nsp3267V267FGttTtt11B.1.2360.002053
ORF1ab/nsp3267V267FGttTtt11B.1.2430.00007
ORF1ab/nsp3267V267FGttTtt11B.1.2580.000067
ORF1ab/nsp3267V267FGttTtt11B.1.3560.001727
ORF1ab/nsp3267V267FGttTtt11B.1.36.290.000517
ORF1ab/nsp3267V267FGttTtt11B.1.4110.003704
ORF1ab/nsp3267V267FGttTtt11B.1.4160.001269
ORF1ab/nsp3267V267FGttTtt11B.1.4230.010204
ORF1ab/nsp3267V267FGttTtt11B.1.4260.001009
ORF1ab/nsp3267V267FGttTtt11B.1.4700.001404
ORF1ab/nsp3267V267FGttTtt11B.1.5260.000024
ORF1ab/nsp3267V267FGttTtt11B.1.5960.000087
ORF1ab/nsp3267V267FGttTtt11B.1.6340.003425
ORF1ab/nsp3267V267FGttTtt11B.1.910.002075
ORF1ab/nsp3267V267FGttTtt11B.550.00295
ORF1ab/nsp3267V267FGttTtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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