CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V253V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3253V253VV1071VsyngtTgtA162810240.6289933476-3478
ORF1ab/nsp3253V253VV1071VsyngtTgtC16284490.2757993476-3478
ORF1ab/nsp3253V253VV1071VsyngtTgtG16281550.09520883476-3478

Details of the mutation V253V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3253V253VgtTgtA10241628All0.000196
ORF1ab/nsp3253V253VgtTgtC4491628All0.000086
ORF1ab/nsp3253V253VgtTgtG1551628All0.00003
ORF1ab/nsp3253V253VgtTgtA777826AY.40.001209
ORF1ab/nsp3253V253VgtTgtC49826AY.40.000076
ORF1ab/nsp3253V253VgtTgtG131131B.1.1.5250.715847
ORF1ab/nsp3253V253VgtTgtC9494AY.460.009784
ORF1ab/nsp3253V253VgtTgtC5782B.1.1.70.000051
ORF1ab/nsp3253V253VgtTgtA2482B.1.1.70.000021
ORF1ab/nsp3253V253VgtTgtG182B.1.1.70.000001
ORF1ab/nsp3253V253VgtTgtA2649B.1.617.20.000098
ORF1ab/nsp3253V253VgtTgtC2349B.1.617.20.000087
ORF1ab/nsp3253V253VgtTgtA3236AY.30.000318
ORF1ab/nsp3253V253VgtTgtC436AY.30.00004
ORF1ab/nsp3253V253VgtTgtA3434B.1.1.2840.003652
ORF1ab/nsp3253V253VgtTgtA2626B.1.160.80.033505
ORF1ab/nsp3253V253VgtTgtC2424AY.330.001603
ORF1ab/nsp3253V253VgtTgtA2424B.1.1.5190.000953
ORF1ab/nsp3253V253VgtTgtC1522B.1.10.000272
ORF1ab/nsp3253V253VgtTgtG422B.1.10.000073
ORF1ab/nsp3253V253VgtTgtA322B.1.10.000054
ORF1ab/nsp3253V253VgtTgtC1321AY.50.000268
ORF1ab/nsp3253V253VgtTgtG821AY.50.000165
ORF1ab/nsp3253V253VgtTgtC1920AY.250.000114
ORF1ab/nsp3253V253VgtTgtA120AY.250.000006
ORF1ab/nsp3253V253VgtTgtC1116AY.430.000049
ORF1ab/nsp3253V253VgtTgtA516AY.430.000022
ORF1ab/nsp3253V253VgtTgtC915B.1.5960.000784
ORF1ab/nsp3253V253VgtTgtA615B.1.5960.000523
ORF1ab/nsp3253V253VgtTgtC814B.10.000073
ORF1ab/nsp3253V253VgtTgtA414B.10.000037
ORF1ab/nsp3253V253VgtTgtG214B.10.000018
ORF1ab/nsp3253V253VgtTgtC1112AY.440.000067
ORF1ab/nsp3253V253VgtTgtA112AY.440.000006
ORF1ab/nsp3253V253VgtTgtA612B.1.20.000053
ORF1ab/nsp3253V253VgtTgtC412B.1.20.000035
ORF1ab/nsp3253V253VgtTgtG212B.1.20.000018
ORF1ab/nsp3253V253VgtTgtC1010AY.4.20.000217
ORF1ab/nsp3253V253VgtTgtC99AY.1180.000564
ORF1ab/nsp3253V253VgtTgtA99B.1.2980.019027
ORF1ab/nsp3253V253VgtTgtC88AY.1210.001083
ORF1ab/nsp3253V253VgtTgtA88B.1.1110.009401
ORF1ab/nsp3253V253VgtTgtC77D.20.000525
ORF1ab/nsp3253V253VgtTgtC66A.2.50.002994
ORF1ab/nsp3253V253VgtTgtC55AY.740.000578
ORF1ab/nsp3253V253VgtTgtC45B.1.1.3060.001754
ORF1ab/nsp3253V253VgtTgtA15B.1.1.3060.000438
ORF1ab/nsp3253V253VgtTgtC55B.1.258.170.00052
ORF1ab/nsp3253V253VgtTgtC34AY.1030.000019
ORF1ab/nsp3253V253VgtTgtA14AY.1030.000006
ORF1ab/nsp3253V253VgtTgtA24AY.450.000243
ORF1ab/nsp3253V253VgtTgtC24AY.450.000243
ORF1ab/nsp3253V253VgtTgtC23AY.390.000049
ORF1ab/nsp3253V253VgtTgtA13AY.390.000025
ORF1ab/nsp3253V253VgtTgtC33AY.46.60.000217
ORF1ab/nsp3253V253VgtTgtA33B.1.1.2310.009288
ORF1ab/nsp3253V253VgtTgtC23B.1.1770.000026
ORF1ab/nsp3253V253VgtTgtA13B.1.1770.000013
ORF1ab/nsp3253V253VgtTgtG23B.1.2340.000264
ORF1ab/nsp3253V253VgtTgtC13B.1.2340.000132
ORF1ab/nsp3253V253VgtTgtA33B.1.4290.000071
ORF1ab/nsp3253V253VgtTgtC120.055556
ORF1ab/nsp3253V253VgtTgtA120.055556
ORF1ab/nsp3253V253VgtTgtC22AY.240.000862
ORF1ab/nsp3253V253VgtTgtC22AY.260.000057
ORF1ab/nsp3253V253VgtTgtC22AY.290.000032
ORF1ab/nsp3253V253VgtTgtC22AY.3.10.000171
ORF1ab/nsp3253V253VgtTgtG22AY.470.000062
ORF1ab/nsp3253V253VgtTgtC22AY.570.001312
ORF1ab/nsp3253V253VgtTgtA22AY.680.000547
ORF1ab/nsp3253V253VgtTgtA22AY.980.000158
ORF1ab/nsp3253V253VgtTgtC22B.1.1.1410.004024
ORF1ab/nsp3253V253VgtTgtC22B.1.1.630.000772
ORF1ab/nsp3253V253VgtTgtA22B.1.177.860.000367
ORF1ab/nsp3253V253VgtTgtC22B.1.2430.000139
ORF1ab/nsp3253V253VgtTgtC22B.1.2580.000133
ORF1ab/nsp3253V253VgtTgtA22B.1.5260.000047
ORF1ab/nsp3253V253VgtTgtA22P.1.140.000096
ORF1ab/nsp3253V253VgtTgtA22P.20.000373
ORF1ab/nsp3253V253VgtTgtA11A0.000387
ORF1ab/nsp3253V253VgtTgtC11AY.1000.000046
ORF1ab/nsp3253V253VgtTgtC11AY.1020.000027
ORF1ab/nsp3253V253VgtTgtG11AY.130.000161
ORF1ab/nsp3253V253VgtTgtA11AY.320.000532
ORF1ab/nsp3253V253VgtTgtA11AY.340.000097
ORF1ab/nsp3253V253VgtTgtC11AY.380.000499
ORF1ab/nsp3253V253VgtTgtA11AY.39.10.00004
ORF1ab/nsp3253V253VgtTgtC11AY.46.40.000165
ORF1ab/nsp3253V253VgtTgtC11AY.520.000814
ORF1ab/nsp3253V253VgtTgtA11AY.60.000041
ORF1ab/nsp3253V253VgtTgtA11AY.610.000105
ORF1ab/nsp3253V253VgtTgtC11AY.620.000436
ORF1ab/nsp3253V253VgtTgtC11AY.710.000475
ORF1ab/nsp3253V253VgtTgtA11AY.840.000437
ORF1ab/nsp3253V253VgtTgtG11AY.9.20.000037
ORF1ab/nsp3253V253VgtTgtC11B.1.1.3070.002532
ORF1ab/nsp3253V253VgtTgtA11B.1.1.370.000193
ORF1ab/nsp3253V253VgtTgtC11B.1.1.3890.006061
ORF1ab/nsp3253V253VgtTgtC11B.1.1.3980.003226
ORF1ab/nsp3253V253VgtTgtC11B.1.1.4170.002703
ORF1ab/nsp3253V253VgtTgtG11B.1.1.50.008333
ORF1ab/nsp3253V253VgtTgtC11B.1.130.002375
ORF1ab/nsp3253V253VgtTgtA11B.1.177.600.000218
ORF1ab/nsp3253V253VgtTgtA11B.1.2210.000071
ORF1ab/nsp3253V253VgtTgtC11B.1.3300.028571
ORF1ab/nsp3253V253VgtTgtC11B.1.3380.008621
ORF1ab/nsp3253V253VgtTgtA11B.1.3910.001127
ORF1ab/nsp3253V253VgtTgtC11B.1.4030.003268
ORF1ab/nsp3253V253VgtTgtA11B.1.4700.001404
ORF1ab/nsp3253V253VgtTgtC11B.1.4990.00105
ORF1ab/nsp3253V253VgtTgtC11B.1.5080.025641
ORF1ab/nsp3253V253VgtTgtC11B.1.5610.000397
ORF1ab/nsp3253V253VgtTgtC11B.1.617.10.000129
ORF1ab/nsp3253V253VgtTgtC11B.1.6370.000073
ORF1ab/nsp3253V253VgtTgtC11B.310.003731
ORF1ab/nsp3253V253VgtTgtC11C.36.3.10.002717
ORF1ab/nsp3253V253VgtTgtA11C.370.000116