CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V1538V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31538V1538VV2356VsyngtAgtG1691580.9349117331-7333
ORF1ab/nsp31538V1538VV2356VsyngtAgtT16960.0355037331-7333
ORF1ab/nsp31538V1538VV2356VsyngtAgtC16950.02958587331-7333

Details of the mutation V1538V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31538V1538VgtAgtG158169All0.00003
ORF1ab/nsp31538V1538VgtAgtT6169All0.000001
ORF1ab/nsp31538V1538VgtAgtC5169All0.000001
ORF1ab/nsp31538V1538VgtAgtG4141B.1.1.70.000037
ORF1ab/nsp31538V1538VgtAgtG2929B.1.3340.527273
ORF1ab/nsp31538V1538VgtAgtG1111AY.1030.000068
ORF1ab/nsp31538V1538VgtAgtG1111AY.440.000067
ORF1ab/nsp31538V1538VgtAgtG88AY.450.000973
ORF1ab/nsp31538V1538VgtAgtG77AY.260.000198
ORF1ab/nsp31538V1538VgtAgtG77AY.40.000011
ORF1ab/nsp31538V1538VgtAgtT460.222222
ORF1ab/nsp31538V1538VgtAgtC260.111111
ORF1ab/nsp31538V1538VgtAgtG56AY.30.00005
ORF1ab/nsp31538V1538VgtAgtC16AY.30.00001
ORF1ab/nsp31538V1538VgtAgtG55B.1.1.3260.008803
ORF1ab/nsp31538V1538VgtAgtG34B.10.000027
ORF1ab/nsp31538V1538VgtAgtC14B.10.000009
ORF1ab/nsp31538V1538VgtAgtG44B.1.1.5190.000159
ORF1ab/nsp31538V1538VgtAgtG33B.1.20.000026
ORF1ab/nsp31538V1538VgtAgtG33B.1.617.20.000011
ORF1ab/nsp31538V1538VgtAgtG22AY.1170.000169
ORF1ab/nsp31538V1538VgtAgtG22AY.330.000134
ORF1ab/nsp31538V1538VgtAgtG22AY.390.000049
ORF1ab/nsp31538V1538VgtAgtG22B.1.1.3060.000877
ORF1ab/nsp31538V1538VgtAgtG12B.1.2210.000071
ORF1ab/nsp31538V1538VgtAgtC12B.1.2210.000071
ORF1ab/nsp31538V1538VgtAgtT22B.1.5170.000854
ORF1ab/nsp31538V1538VgtAgtG11AY.430.000004
ORF1ab/nsp31538V1538VgtAgtG11B0.000128
ORF1ab/nsp31538V1538VgtAgtG11B.1.10.000018
ORF1ab/nsp31538V1538VgtAgtG11B.1.1.1760.000439
ORF1ab/nsp31538V1538VgtAgtG11B.1.1770.000013
ORF1ab/nsp31538V1538VgtAgtG11B.1.3510.00003
ORF1ab/nsp31538V1538VgtAgtG11B.1.360.000146
ORF1ab/nsp31538V1538VgtAgtG11B.1.5370.02
ORF1ab/nsp31538V1538VgtAgtG11B.1.5380.008065
ORF1ab/nsp31538V1538VgtAgtG11B.1.6370.000073
ORF1ab/nsp31538V1538VgtAgtG11P.10.000016
ORF1ab/nsp31538V1538VgtAgtG11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.