CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V1388del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31388V1388del1V2206del1delGtc-tc940.4444446881-6883
ORF1ab/nsp31388V1388del1V2206del1delgtCgt-930.3333336881-6883
ORF1ab/nsp31388V1388del1V2206del1delGTC-GT920.2222226881-6883

Details of the mutation V1388del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31388V1388del1Gtc-tc49All0.000001
ORF1ab/nsp31388V1388del1gtCgt-39All0.000001
ORF1ab/nsp31388V1388del1GTC-GT29All0
ORF1ab/nsp31388V1388del1GTC-GT220.111111
ORF1ab/nsp31388V1388del1Gtc-tc12B.1.1.70.000001
ORF1ab/nsp31388V1388del1gtCgt-12B.1.1.70.000001
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.1.1700.001247
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.1610.017241
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.20.000009
ORF1ab/nsp31388V1388del1gtCgt-11B.1.36.170.000494
ORF1ab/nsp31388V1388del1gtCgt-11C.350.000774