CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1331 | V1331F | V2149F | nonsyn | Gtt | Ttt | 991 | 991 | 1 | 6710-6712 |
Details of the mutation V1331F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 991 | 991 | All | 0.00019 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 153 | 153 | B.1.1.7 | 0.000137 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 133 | 133 | B.1.617.2 | 0.000501 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 113 | 113 | AY.3 | 0.001124 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 87 | 87 | AY.106 | 0.029136 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 74 | 74 | B.1.429 | 0.001741 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 19 | 19 | B.1.1.392 | 1 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 16 | 16 | B.1.466.2 | 0.00626 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 13 | 13 | C.36 | 0.01184 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 10 | 10 | B.1.177.32 | 0.013495 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 5 | 5 | B.1.1.374 | 0.011876 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | B.1.1.71 | 0.018182 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.428.1 | 0.034483 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1331 | V1331F | Gtt | Ttt | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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