CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V1243F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31243V1243FV2061FnonsynGttTtt3665366516446-6448

Details of the mutation V1243F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31243V1243FGttTtt36653665All0.000701
ORF1ab/nsp31243V1243FGttTtt675675B.1.1.70.000604
ORF1ab/nsp31243V1243FGttTtt310310AY.40.000482
ORF1ab/nsp31243V1243FGttTtt283283B.1.10.005134
ORF1ab/nsp31243V1243FGttTtt239239AY.390.005906
ORF1ab/nsp31243V1243FGttTtt160160B.10.001466
ORF1ab/nsp31243V1243FGttTtt160160B.1.1770.002107
ORF1ab/nsp31243V1243FGttTtt131131B.1.20.001154
ORF1ab/nsp31243V1243FGttTtt114114AY.250.000686
ORF1ab/nsp31243V1243FGttTtt103103AY.1030.00064
ORF1ab/nsp31243V1243FGttTtt9999B.1.617.20.000373
ORF1ab/nsp31243V1243FGttTtt9898B.1.1.2140.005435
ORF1ab/nsp31243V1243FGttTtt7070B.1.1600.002183
ORF1ab/nsp31243V1243FGttTtt6666AY.430.000292
ORF1ab/nsp31243V1243FGttTtt6363D.20.004728
ORF1ab/nsp31243V1243FGttTtt5656AY.440.000341
ORF1ab/nsp31243V1243FGttTtt5353AY.270.00343
ORF1ab/nsp31243V1243FGttTtt5252B.1.360.007587
ORF1ab/nsp31243V1243FGttTtt4949P.10.000772
ORF1ab/nsp31243V1243FGttTtt4646B.1.1.740.198276
ORF1ab/nsp31243V1243FGttTtt3434B.1.177.70.005605
ORF1ab/nsp31243V1243FGttTtt3232B.1.1.390.01631
ORF1ab/nsp31243V1243FGttTtt2727B.1.4000.011583
ORF1ab/nsp31243V1243FGttTtt2525AY.30.000249
ORF1ab/nsp31243V1243FGttTtt2323B.1.4290.000541
ORF1ab/nsp31243V1243FGttTtt2323B.1.5260.000541
ORF1ab/nsp31243V1243FGttTtt2121AY.98.10.001017
ORF1ab/nsp31243V1243FGttTtt2121B.1.4430.098131
ORF1ab/nsp31243V1243FGttTtt1919AY.610.001991
ORF1ab/nsp31243V1243FGttTtt1919B.1.1.2220.003876
ORF1ab/nsp31243V1243FGttTtt1818B.1.177.810.003408
ORF1ab/nsp31243V1243FGttTtt1717AY.1020.000451
ORF1ab/nsp31243V1243FGttTtt1515AY.9.20.000551
ORF1ab/nsp31243V1243FGttTtt1414AY.4.20.000304
ORF1ab/nsp31243V1243FGttTtt1414B.1.4270.000707
ORF1ab/nsp31243V1243FGttTtt1313AY.50.000268
ORF1ab/nsp31243V1243FGttTtt1212AY.260.00034
ORF1ab/nsp31243V1243FGttTtt1111AY.4.40.004501
ORF1ab/nsp31243V1243FGttTtt1111B.1.1.1120.647059
ORF1ab/nsp31243V1243FGttTtt1111C.370.001277
ORF1ab/nsp31243V1243FGttTtt1111P.1.70.003512
ORF1ab/nsp31243V1243FGttTtt1010AY.290.000158
ORF1ab/nsp31243V1243FGttTtt1010AY.330.000668
ORF1ab/nsp31243V1243FGttTtt1010AY.850.004272
ORF1ab/nsp31243V1243FGttTtt1010B.1.2060.008157
ORF1ab/nsp31243V1243FGttTtt1010B.1.2340.001319
ORF1ab/nsp31243V1243FGttTtt99AY.1190.000318
ORF1ab/nsp31243V1243FGttTtt99AY.420.000362
ORF1ab/nsp31243V1243FGttTtt99AY.470.00028
ORF1ab/nsp31243V1243FGttTtt99AY.510.008182
ORF1ab/nsp31243V1243FGttTtt99B.1.1.4190.066667
ORF1ab/nsp31243V1243FGttTtt88AY.360.001186
ORF1ab/nsp31243V1243FGttTtt88AY.90.000541
ORF1ab/nsp31243V1243FGttTtt88B.1.4970.002518
ORF1ab/nsp31243V1243FGttTtt77B.1.1.5190.000278
ORF1ab/nsp31243V1243FGttTtt77P.1.40.006836
ORF1ab/nsp31243V1243FGttTtt77Q.80.001154
ORF1ab/nsp31243V1243FGttTtt66AY.1000.000276
ORF1ab/nsp31243V1243FGttTtt66AY.200.000233
ORF1ab/nsp31243V1243FGttTtt66B.1.4410.057692
ORF1ab/nsp31243V1243FGttTtt55AY.100.00265
ORF1ab/nsp31243V1243FGttTtt55AY.1170.000423
ORF1ab/nsp31243V1243FGttTtt55AY.1200.000186
ORF1ab/nsp31243V1243FGttTtt55AY.230.000349
ORF1ab/nsp31243V1243FGttTtt55AY.450.000608
ORF1ab/nsp31243V1243FGttTtt55AY.75.10.000902
ORF1ab/nsp31243V1243FGttTtt55B.1.3510.000149
ORF1ab/nsp31243V1243FGttTtt55B.1.36.360.00301
ORF1ab/nsp31243V1243FGttTtt44AY.210.00759
ORF1ab/nsp31243V1243FGttTtt44AY.46.40.000658
ORF1ab/nsp31243V1243FGttTtt44AY.7.20.002237
ORF1ab/nsp31243V1243FGttTtt44AY.920.001149
ORF1ab/nsp31243V1243FGttTtt44B.1.1.10.001307
ORF1ab/nsp31243V1243FGttTtt44B.1.1.280.001245
ORF1ab/nsp31243V1243FGttTtt44B.1.177.570.001124
ORF1ab/nsp31243V1243FGttTtt44B.1.4320.044944
ORF1ab/nsp31243V1243FGttTtt44B.1.6210.000354
ORF1ab/nsp31243V1243FGttTtt33A.2.50.001497
ORF1ab/nsp31243V1243FGttTtt33AY.1160.00086
ORF1ab/nsp31243V1243FGttTtt33AY.3.10.000256
ORF1ab/nsp31243V1243FGttTtt33AY.39.10.000119
ORF1ab/nsp31243V1243FGttTtt33AY.4.50.000322
ORF1ab/nsp31243V1243FGttTtt33AY.530.000863
ORF1ab/nsp31243V1243FGttTtt33AY.560.004815
ORF1ab/nsp31243V1243FGttTtt33AY.600.002814
ORF1ab/nsp31243V1243FGttTtt33B.1.1.2160.002671
ORF1ab/nsp31243V1243FGttTtt33B.1.1.3180.000905
ORF1ab/nsp31243V1243FGttTtt33B.1.2430.000209
ORF1ab/nsp31243V1243FGttTtt33B.1.5170.001281
ORF1ab/nsp31243V1243FGttTtt33B.1.5230.007353
ORF1ab/nsp31243V1243FGttTtt33B.1.5640.001278
ORF1ab/nsp31243V1243FGttTtt33B.1.5960.000261
ORF1ab/nsp31243V1243FGttTtt33B.1.6370.000219
ORF1ab/nsp31243V1243FGttTtt33B.330.06383
ORF1ab/nsp31243V1243FGttTtt33C.360.002732
ORF1ab/nsp31243V1243FGttTtt33P.1.140.000143
ORF1ab/nsp31243V1243FGttTtt22A.210.00554
ORF1ab/nsp31243V1243FGttTtt22AY.10.000791
ORF1ab/nsp31243V1243FGttTtt22AY.1100.000225
ORF1ab/nsp31243V1243FGttTtt22AY.1110.000366
ORF1ab/nsp31243V1243FGttTtt22AY.1210.000271
ORF1ab/nsp31243V1243FGttTtt22AY.16.10.00094
ORF1ab/nsp31243V1243FGttTtt22AY.300.000791
ORF1ab/nsp31243V1243FGttTtt22AY.340.000194
ORF1ab/nsp31243V1243FGttTtt22AY.550.001835
ORF1ab/nsp31243V1243FGttTtt22AY.670.000929
ORF1ab/nsp31243V1243FGttTtt22AY.750.000112
ORF1ab/nsp31243V1243FGttTtt22AY.99.20.000184
ORF1ab/nsp31243V1243FGttTtt22B0.000256
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3170.000823
ORF1ab/nsp31243V1243FGttTtt22B.1.1.330.000842
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3540.008772
ORF1ab/nsp31243V1243FGttTtt22B.1.1.4340.000697
ORF1ab/nsp31243V1243FGttTtt22B.1.1.5260.007092
ORF1ab/nsp31243V1243FGttTtt22B.1.3240.00321
ORF1ab/nsp31243V1243FGttTtt22B.1.351.20.000605
ORF1ab/nsp31243V1243FGttTtt22B.1.3560.003454
ORF1ab/nsp31243V1243FGttTtt22B.1.36.20.021505
ORF1ab/nsp31243V1243FGttTtt22B.1.36.240.012346
ORF1ab/nsp31243V1243FGttTtt22B.1.36.290.001035
ORF1ab/nsp31243V1243FGttTtt22B.1.3670.001585
ORF1ab/nsp31243V1243FGttTtt22B.1.4560.006536
ORF1ab/nsp31243V1243FGttTtt22B.1.5400.019417
ORF1ab/nsp31243V1243FGttTtt22B.1.5460.007407
ORF1ab/nsp31243V1243FGttTtt22B.1.5770.001375
ORF1ab/nsp31243V1243FGttTtt22B.1.596.10.018692
ORF1ab/nsp31243V1243FGttTtt22B.1.6230.001073
ORF1ab/nsp31243V1243FGttTtt22P.20.000373
ORF1ab/nsp31243V1243FGttTtt11A.120.166667
ORF1ab/nsp31243V1243FGttTtt11A.270.001656
ORF1ab/nsp31243V1243FGttTtt11A.290.005319
ORF1ab/nsp31243V1243FGttTtt11AY.1040.001984
ORF1ab/nsp31243V1243FGttTtt11AY.1070.000466
ORF1ab/nsp31243V1243FGttTtt11AY.116.10.000311
ORF1ab/nsp31243V1243FGttTtt11AY.1180.000063
ORF1ab/nsp31243V1243FGttTtt11AY.120.10.000321
ORF1ab/nsp31243V1243FGttTtt11AY.130.000161
ORF1ab/nsp31243V1243FGttTtt11AY.29.10.000221
ORF1ab/nsp31243V1243FGttTtt11AY.380.000499
ORF1ab/nsp31243V1243FGttTtt11AY.4.30.000842
ORF1ab/nsp31243V1243FGttTtt11AY.410.000294
ORF1ab/nsp31243V1243FGttTtt11AY.460.000104
ORF1ab/nsp31243V1243FGttTtt11AY.46.50.000198
ORF1ab/nsp31243V1243FGttTtt11AY.5.30.000337
ORF1ab/nsp31243V1243FGttTtt11AY.5.40.000277
ORF1ab/nsp31243V1243FGttTtt11AY.60.000041
ORF1ab/nsp31243V1243FGttTtt11AY.630.000387
ORF1ab/nsp31243V1243FGttTtt11AY.650.000533
ORF1ab/nsp31243V1243FGttTtt11AY.680.000274
ORF1ab/nsp31243V1243FGttTtt11AY.690.000187
ORF1ab/nsp31243V1243FGttTtt11AY.700.000209
ORF1ab/nsp31243V1243FGttTtt11AY.710.000475
ORF1ab/nsp31243V1243FGttTtt11AY.730.000665
ORF1ab/nsp31243V1243FGttTtt11AY.890.004902
ORF1ab/nsp31243V1243FGttTtt11AY.980.000079
ORF1ab/nsp31243V1243FGttTtt11AY.990.001049
ORF1ab/nsp31243V1243FGttTtt11AY.99.10.001553
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1010.01
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1340.011364
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1530.001095
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1570.000913
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2180.007692
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2630.001558
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2650.003155
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2770.000759
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3050.003861
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3200.018182
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3260.001761
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3390.010526
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3620.005618
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3690.000446
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3860.066667
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4120.007634
ORF1ab/nsp31243V1243FGttTtt11B.1.1.470.005348
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4870.005587
ORF1ab/nsp31243V1243FGttTtt11B.1.1.5140.038462
ORF1ab/nsp31243V1243FGttTtt11B.1.1.540.003021
ORF1ab/nsp31243V1243FGttTtt11B.1.1110.001175
ORF1ab/nsp31243V1243FGttTtt11B.1.1700.00431
ORF1ab/nsp31243V1243FGttTtt11B.1.177.170.000821
ORF1ab/nsp31243V1243FGttTtt11B.1.177.210.000076
ORF1ab/nsp31243V1243FGttTtt11B.1.177.330.001645
ORF1ab/nsp31243V1243FGttTtt11B.1.177.420.000894
ORF1ab/nsp31243V1243FGttTtt11B.1.177.730.000566
ORF1ab/nsp31243V1243FGttTtt11B.1.177.770.000726
ORF1ab/nsp31243V1243FGttTtt11B.1.177.860.000183
ORF1ab/nsp31243V1243FGttTtt11B.1.177.870.000728
ORF1ab/nsp31243V1243FGttTtt11B.1.220.001318
ORF1ab/nsp31243V1243FGttTtt11B.1.2400.000216
ORF1ab/nsp31243V1243FGttTtt11B.1.2580.000067
ORF1ab/nsp31243V1243FGttTtt11B.1.258.170.000104
ORF1ab/nsp31243V1243FGttTtt11B.1.2790.000514
ORF1ab/nsp31243V1243FGttTtt11B.1.36.180.00042
ORF1ab/nsp31243V1243FGttTtt11B.1.36.350.002604
ORF1ab/nsp31243V1243FGttTtt11B.1.36.380.001642
ORF1ab/nsp31243V1243FGttTtt11B.1.3620.001541
ORF1ab/nsp31243V1243FGttTtt11B.1.3690.000285
ORF1ab/nsp31243V1243FGttTtt11B.1.3750.00082
ORF1ab/nsp31243V1243FGttTtt11B.1.3810.007812
ORF1ab/nsp31243V1243FGttTtt11B.1.3850.010638
ORF1ab/nsp31243V1243FGttTtt11B.1.4110.003704
ORF1ab/nsp31243V1243FGttTtt11B.1.415.10.007576
ORF1ab/nsp31243V1243FGttTtt11B.1.4530.003236
ORF1ab/nsp31243V1243FGttTtt11B.1.4590.004082
ORF1ab/nsp31243V1243FGttTtt11B.1.4650.003802
ORF1ab/nsp31243V1243FGttTtt11B.1.4990.00105
ORF1ab/nsp31243V1243FGttTtt11B.1.5250.000113
ORF1ab/nsp31243V1243FGttTtt11B.1.5600.00463
ORF1ab/nsp31243V1243FGttTtt11B.1.6000.005848
ORF1ab/nsp31243V1243FGttTtt11B.1.6060.006024
ORF1ab/nsp31243V1243FGttTtt11B.1.617.10.000129
ORF1ab/nsp31243V1243FGttTtt11B.1.617.30.002985
ORF1ab/nsp31243V1243FGttTtt11B.400.000364
ORF1ab/nsp31243V1243FGttTtt11D.30.005917
ORF1ab/nsp31243V1243FGttTtt11N.30.005814
ORF1ab/nsp31243V1243FGttTtt11N.50.001767
ORF1ab/nsp31243V1243FGttTtt11P.1.150.000232
ORF1ab/nsp31243V1243FGttTtt11P.1.20.001156
ORF1ab/nsp31243V1243FGttTtt11Q.30.000145
ORF1ab/nsp31243V1243FGttTtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.