CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V1234V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31234V1234VV2052VsyngtGgtT996697660.9799326419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtA99661730.0173596419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtC9966270.002709216419-6421

Details of the mutation V1234V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31234V1234VgtGgtT97669966All0.001868
ORF1ab/nsp31234V1234VgtGgtA1739966All0.000033
ORF1ab/nsp31234V1234VgtGgtC279966All0.000005
ORF1ab/nsp31234V1234VgtGgtT51915204AY.1030.032231
ORF1ab/nsp31234V1234VgtGgtA135204AY.1030.000081
ORF1ab/nsp31234V1234VgtGgtT17791793B.1.617.20.006699
ORF1ab/nsp31234V1234VgtGgtA131793B.1.617.20.000049
ORF1ab/nsp31234V1234VgtGgtC11793B.1.617.20.000004
ORF1ab/nsp31234V1234VgtGgtT563585AY.40.000876
ORF1ab/nsp31234V1234VgtGgtA21585AY.40.000033
ORF1ab/nsp31234V1234VgtGgtC1585AY.40.000002
ORF1ab/nsp31234V1234VgtGgtT311311AY.39.10.01232
ORF1ab/nsp31234V1234VgtGgtT260285B.1.1.70.000233
ORF1ab/nsp31234V1234VgtGgtA23285B.1.1.70.000021
ORF1ab/nsp31234V1234VgtGgtC2285B.1.1.70.000002
ORF1ab/nsp31234V1234VgtGgtT173173B.1.5670.576667
ORF1ab/nsp31234V1234VgtGgtT130130N.50.229682
ORF1ab/nsp31234V1234VgtGgtT108109B.1.438.10.011584
ORF1ab/nsp31234V1234VgtGgtA1109B.1.438.10.000107
ORF1ab/nsp31234V1234VgtGgtT106106B.1.5811
ORF1ab/nsp31234V1234VgtGgtT98100AY.30.000975
ORF1ab/nsp31234V1234VgtGgtA2100AY.30.00002
ORF1ab/nsp31234V1234VgtGgtT9999B.1.4290.002329
ORF1ab/nsp31234V1234VgtGgtT9393AY.230.006487
ORF1ab/nsp31234V1234VgtGgtT8186B.10.000742
ORF1ab/nsp31234V1234VgtGgtC386B.10.000027
ORF1ab/nsp31234V1234VgtGgtA286B.10.000018
ORF1ab/nsp31234V1234VgtGgtT7374B.1.1770.000961
ORF1ab/nsp31234V1234VgtGgtA174B.1.1770.000013
ORF1ab/nsp31234V1234VgtGgtT5559AY.440.000335
ORF1ab/nsp31234V1234VgtGgtC459AY.440.000024
ORF1ab/nsp31234V1234VgtGgtA4058B.1.20.000352
ORF1ab/nsp31234V1234VgtGgtT1858B.1.20.000158
ORF1ab/nsp31234V1234VgtGgtT3535AY.430.000155
ORF1ab/nsp31234V1234VgtGgtT3333B.1.6370.002411
ORF1ab/nsp31234V1234VgtGgtT2929AY.60.001193
ORF1ab/nsp31234V1234VgtGgtT2626B.1.4270.001313
ORF1ab/nsp31234V1234VgtGgtT2325AY.250.000138
ORF1ab/nsp31234V1234VgtGgtA225AY.250.000012
ORF1ab/nsp31234V1234VgtGgtT2222B.1.1600.000686
ORF1ab/nsp31234V1234VgtGgtT1518AY.390.000371
ORF1ab/nsp31234V1234VgtGgtA318AY.390.000074
ORF1ab/nsp31234V1234VgtGgtT1718B.1.10.000308
ORF1ab/nsp31234V1234VgtGgtA118B.1.10.000018
ORF1ab/nsp31234V1234VgtGgtT1616P.1.140.000765
ORF1ab/nsp31234V1234VgtGgtT815AY.1020.000212
ORF1ab/nsp31234V1234VgtGgtA715AY.1020.000186
ORF1ab/nsp31234V1234VgtGgtT1515B.1.1.330.006313
ORF1ab/nsp31234V1234VgtGgtT1415B.1.6090.006711
ORF1ab/nsp31234V1234VgtGgtA115B.1.6090.000479
ORF1ab/nsp31234V1234VgtGgtT1515P.10.000236
ORF1ab/nsp31234V1234VgtGgtT1515P.20.0028
ORF1ab/nsp31234V1234VgtGgtT1414B.1.1.4480.028455
ORF1ab/nsp31234V1234VgtGgtA913AY.260.000255
ORF1ab/nsp31234V1234VgtGgtT413AY.260.000113
ORF1ab/nsp31234V1234VgtGgtC1313B.1.5070.146067
ORF1ab/nsp31234V1234VgtGgtT1212AY.290.000189
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.280.003735
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.5190.000477
ORF1ab/nsp31234V1234VgtGgtT1111AY.46.60.000794
ORF1ab/nsp31234V1234VgtGgtT1010AY.420.000402
ORF1ab/nsp31234V1234VgtGgtA610B.1.3510.000178
ORF1ab/nsp31234V1234VgtGgtT410B.1.3510.000119
ORF1ab/nsp31234V1234VgtGgtT1010P.1.100.002695
ORF1ab/nsp31234V1234VgtGgtT89AY.450.000973
ORF1ab/nsp31234V1234VgtGgtA19AY.450.000122
ORF1ab/nsp31234V1234VgtGgtT99AY.850.003845
ORF1ab/nsp31234V1234VgtGgtT78AY.4.20.000152
ORF1ab/nsp31234V1234VgtGgtA18AY.4.20.000022
ORF1ab/nsp31234V1234VgtGgtT67AY.50.000124
ORF1ab/nsp31234V1234VgtGgtA17AY.50.000021
ORF1ab/nsp31234V1234VgtGgtA57B.1.1.3060.002192
ORF1ab/nsp31234V1234VgtGgtT27B.1.1.3060.000877
ORF1ab/nsp31234V1234VgtGgtT77B.1.5260.000165
ORF1ab/nsp31234V1234VgtGgtT56AY.1170.000423
ORF1ab/nsp31234V1234VgtGgtA16AY.1170.000085
ORF1ab/nsp31234V1234VgtGgtT66AY.140.000528
ORF1ab/nsp31234V1234VgtGgtT66AY.7.10.000676
ORF1ab/nsp31234V1234VgtGgtT66B.1.5950.001566
ORF1ab/nsp31234V1234VgtGgtT45AY.460.000416
ORF1ab/nsp31234V1234VgtGgtA15AY.460.000104
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3080.058824
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3760.029762
ORF1ab/nsp31234V1234VgtGgtT55B.1.6210.000443
ORF1ab/nsp31234V1234VgtGgtT44AY.1000.000184
ORF1ab/nsp31234V1234VgtGgtT34AY.1190.000106
ORF1ab/nsp31234V1234VgtGgtA14AY.1190.000035
ORF1ab/nsp31234V1234VgtGgtT44AY.160.001519
ORF1ab/nsp31234V1234VgtGgtA44AY.5.10.015038
ORF1ab/nsp31234V1234VgtGgtT44AY.860.00332
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.2220.000816
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.4320.005063
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.500.002716
ORF1ab/nsp31234V1234VgtGgtT44B.1.2580.000266
ORF1ab/nsp31234V1234VgtGgtT44B.1.5960.000349
ORF1ab/nsp31234V1234VgtGgtT33AY.330.0002
ORF1ab/nsp31234V1234VgtGgtT33AY.46.40.000494
ORF1ab/nsp31234V1234VgtGgtT33AY.670.001393
ORF1ab/nsp31234V1234VgtGgtT33AY.750.000168
ORF1ab/nsp31234V1234VgtGgtT23AY.980.000158
ORF1ab/nsp31234V1234VgtGgtA13AY.980.000079
ORF1ab/nsp31234V1234VgtGgtT33AY.99.20.000276
ORF1ab/nsp31234V1234VgtGgtA23B.1.1.1890.003026
ORF1ab/nsp31234V1234VgtGgtT13B.1.1.1890.001513
ORF1ab/nsp31234V1234VgtGgtT33B.1.360.000438
ORF1ab/nsp31234V1234VgtGgtA33B.1.6280.001057
ORF1ab/nsp31234V1234VgtGgtT33B.350.023438
ORF1ab/nsp31234V1234VgtGgtT33P.1.150.000697
ORF1ab/nsp31234V1234VgtGgtT33P.1.70.000958
ORF1ab/nsp31234V1234VgtGgtT22AY.1160.000574
ORF1ab/nsp31234V1234VgtGgtT22AY.1200.000074
ORF1ab/nsp31234V1234VgtGgtT22AY.1210.000271
ORF1ab/nsp31234V1234VgtGgtT22AY.200.000078
ORF1ab/nsp31234V1234VgtGgtT22AY.4.50.000215
ORF1ab/nsp31234V1234VgtGgtT22AY.46.20.001271
ORF1ab/nsp31234V1234VgtGgtT22AY.470.000062
ORF1ab/nsp31234V1234VgtGgtT22AY.540.000191
ORF1ab/nsp31234V1234VgtGgtT22AY.610.00021
ORF1ab/nsp31234V1234VgtGgtT22AY.9.20.000073
ORF1ab/nsp31234V1234VgtGgtT22AY.920.000575
ORF1ab/nsp31234V1234VgtGgtT22AY.950.001522
ORF1ab/nsp31234V1234VgtGgtT22B0.000256
ORF1ab/nsp31234V1234VgtGgtA12B.1.1.250.000569
ORF1ab/nsp31234V1234VgtGgtT12B.1.1.250.000569
ORF1ab/nsp31234V1234VgtGgtT22B.1.177.70.00033
ORF1ab/nsp31234V1234VgtGgtT22B.1.2210.000142
ORF1ab/nsp31234V1234VgtGgtT22B.1.2430.000139
ORF1ab/nsp31234V1234VgtGgtC22B.1.351.50.001199
ORF1ab/nsp31234V1234VgtGgtT22B.1.466.20.000782
ORF1ab/nsp31234V1234VgtGgtT22B.1.4700.002809
ORF1ab/nsp31234V1234VgtGgtT22B.1.564.10.003155
ORF1ab/nsp31234V1234VgtGgtT22B.1.6200.001892
ORF1ab/nsp31234V1234VgtGgtT22D.20.00015
ORF1ab/nsp31234V1234VgtGgtT22P.1.120.000968
ORF1ab/nsp31234V1234VgtGgtT11AY.1010.00049
ORF1ab/nsp31234V1234VgtGgtC11AY.1090.00074
ORF1ab/nsp31234V1234VgtGgtT11AY.130.000161
ORF1ab/nsp31234V1234VgtGgtT11AY.16.10.00047
ORF1ab/nsp31234V1234VgtGgtT11AY.270.000065
ORF1ab/nsp31234V1234VgtGgtT11AY.29.10.000221
ORF1ab/nsp31234V1234VgtGgtT11AY.340.000097
ORF1ab/nsp31234V1234VgtGgtT11AY.350.000233
ORF1ab/nsp31234V1234VgtGgtT11AY.380.000499
ORF1ab/nsp31234V1234VgtGgtT11AY.400.000964
ORF1ab/nsp31234V1234VgtGgtT11AY.480.000465
ORF1ab/nsp31234V1234VgtGgtT11AY.5.30.000337
ORF1ab/nsp31234V1234VgtGgtA11AY.5.40.000277
ORF1ab/nsp31234V1234VgtGgtT11AY.590.00053
ORF1ab/nsp31234V1234VgtGgtT11AY.640.000595
ORF1ab/nsp31234V1234VgtGgtT11AY.660.00107
ORF1ab/nsp31234V1234VgtGgtT11AY.680.000274
ORF1ab/nsp31234V1234VgtGgtT11AY.70.000196
ORF1ab/nsp31234V1234VgtGgtT11AY.7.20.000559
ORF1ab/nsp31234V1234VgtGgtT11AY.740.000116
ORF1ab/nsp31234V1234VgtGgtT11AY.890.004902
ORF1ab/nsp31234V1234VgtGgtT11AY.940.000443
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.10.000327
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.1330.008475
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2840.000107
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.2940.001266
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3180.000302
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3560.008547
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.370.000193
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.5260.003546
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.610.008772
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.700.000341
ORF1ab/nsp31234V1234VgtGgtA11B.1.160.270.015152
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.730.000566
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.810.000189
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.860.000183
ORF1ab/nsp31234V1234VgtGgtT11B.1.1950.005025
ORF1ab/nsp31234V1234VgtGgtT11B.1.2060.000816
ORF1ab/nsp31234V1234VgtGgtT11B.1.2180.005155
ORF1ab/nsp31234V1234VgtGgtT11B.1.221.20.004016
ORF1ab/nsp31234V1234VgtGgtT11B.1.2390.001221
ORF1ab/nsp31234V1234VgtGgtT11B.1.2420.018868
ORF1ab/nsp31234V1234VgtGgtT11B.1.3050.002151
ORF1ab/nsp31234V1234VgtGgtT11B.1.3490.000715
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.180.00042
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.360.000602
ORF1ab/nsp31234V1234VgtGgtT11B.1.3610.001289
ORF1ab/nsp31234V1234VgtGgtT11B.1.3630.012987
ORF1ab/nsp31234V1234VgtGgtT11B.1.3690.000285
ORF1ab/nsp31234V1234VgtGgtT11B.1.3960.000706
ORF1ab/nsp31234V1234VgtGgtT11B.1.416.10.001563
ORF1ab/nsp31234V1234VgtGgtT11B.1.4240.008065
ORF1ab/nsp31234V1234VgtGgtT11B.1.428.20.033333
ORF1ab/nsp31234V1234VgtGgtT11B.1.4380.006536
ORF1ab/nsp31234V1234VgtGgtT11B.1.4560.003268
ORF1ab/nsp31234V1234VgtGgtT11B.1.5250.000113
ORF1ab/nsp31234V1234VgtGgtT11B.1.5640.000426
ORF1ab/nsp31234V1234VgtGgtA11B.1.5680.001111
ORF1ab/nsp31234V1234VgtGgtA11B.1.5750.000303
ORF1ab/nsp31234V1234VgtGgtT11B.1.5770.000687
ORF1ab/nsp31234V1234VgtGgtT11B.1.617.10.000129
ORF1ab/nsp31234V1234VgtGgtT11B.1.621.10.000506
ORF1ab/nsp31234V1234VgtGgtT11B.1.6270.00202
ORF1ab/nsp31234V1234VgtGgtT11B.1.760.011364
ORF1ab/nsp31234V1234VgtGgtT11B.1.930.000934
ORF1ab/nsp31234V1234VgtGgtT11B.60.00091
ORF1ab/nsp31234V1234VgtGgtT11C.370.000116
ORF1ab/nsp31234V1234VgtGgtT11P.1.170.000162
ORF1ab/nsp31234V1234VgtGgtT11P.40.003802
ORF1ab/nsp31234V1234VgtGgtT11Q.10.000126