CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = V1229V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31229V1229VV2047VsyngtCgtT292426740.9145016404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtA29242480.08481536404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtG292420.0006839956404-6406

Details of the mutation V1229V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31229V1229VgtCgtT26742924All0.000511
ORF1ab/nsp31229V1229VgtCgtA2482924All0.000047
ORF1ab/nsp31229V1229VgtCgtG22924All0
ORF1ab/nsp31229V1229VgtCgtT16391639B.1.3290.995747
ORF1ab/nsp31229V1229VgtCgtT289291B.1.1.70.000259
ORF1ab/nsp31229V1229VgtCgtA2291B.1.1.70.000002
ORF1ab/nsp31229V1229VgtCgtA173225AY.250.001041
ORF1ab/nsp31229V1229VgtCgtT52225AY.250.000313
ORF1ab/nsp31229V1229VgtCgtT9191AY.620.039651
ORF1ab/nsp31229V1229VgtCgtT4955B.1.617.20.000185
ORF1ab/nsp31229V1229VgtCgtA655B.1.617.20.000023
ORF1ab/nsp31229V1229VgtCgtT5054B.10.000458
ORF1ab/nsp31229V1229VgtCgtA454B.10.000037
ORF1ab/nsp31229V1229VgtCgtT4545B.1.1.3350.584416
ORF1ab/nsp31229V1229VgtCgtT4343P.10.000677
ORF1ab/nsp31229V1229VgtCgtT3536B.1.20.000308
ORF1ab/nsp31229V1229VgtCgtA136B.1.20.000009
ORF1ab/nsp31229V1229VgtCgtT3232B.1.3360.078049
ORF1ab/nsp31229V1229VgtCgtA2727B.1.1390.019795
ORF1ab/nsp31229V1229VgtCgtT2626B.1.1.821
ORF1ab/nsp31229V1229VgtCgtT2325AY.1030.000143
ORF1ab/nsp31229V1229VgtCgtA225AY.1030.000012
ORF1ab/nsp31229V1229VgtCgtT2424B.1.1.5190.000953
ORF1ab/nsp31229V1229VgtCgtT2122AY.40.000033
ORF1ab/nsp31229V1229VgtCgtA122AY.40.000002
ORF1ab/nsp31229V1229VgtCgtT2121B.1.3510.000624
ORF1ab/nsp31229V1229VgtCgtT1717A.270.028146
ORF1ab/nsp31229V1229VgtCgtT1215B.1.10.000218
ORF1ab/nsp31229V1229VgtCgtA315B.1.10.000054
ORF1ab/nsp31229V1229VgtCgtT1515P.1.40.014648
ORF1ab/nsp31229V1229VgtCgtT1111AY.1200.000409
ORF1ab/nsp31229V1229VgtCgtA1011AY.230.000697
ORF1ab/nsp31229V1229VgtCgtT111AY.230.00007
ORF1ab/nsp31229V1229VgtCgtT910AY.30.00009
ORF1ab/nsp31229V1229VgtCgtA110AY.30.00001
ORF1ab/nsp31229V1229VgtCgtT59AY.440.00003
ORF1ab/nsp31229V1229VgtCgtA39AY.440.000018
ORF1ab/nsp31229V1229VgtCgtG19AY.440.000006
ORF1ab/nsp31229V1229VgtCgtT88B.1.3670.006339
ORF1ab/nsp31229V1229VgtCgtT77AY.1020.000186
ORF1ab/nsp31229V1229VgtCgtT77AY.1190.000247
ORF1ab/nsp31229V1229VgtCgtT77B.1.1770.000092
ORF1ab/nsp31229V1229VgtCgtT77B.1.2210.000497
ORF1ab/nsp31229V1229VgtCgtT66B.1.4270.000303
ORF1ab/nsp31229V1229VgtCgtT55AY.740.000578
ORF1ab/nsp31229V1229VgtCgtT55B.1.5650.004052
ORF1ab/nsp31229V1229VgtCgtT44AY.390.000099
ORF1ab/nsp31229V1229VgtCgtT44AY.50.000083
ORF1ab/nsp31229V1229VgtCgtT44AY.750.000224
ORF1ab/nsp31229V1229VgtCgtT33AY.1000.000138
ORF1ab/nsp31229V1229VgtCgtT33AY.200.000117
ORF1ab/nsp31229V1229VgtCgtT33AY.420.000121
ORF1ab/nsp31229V1229VgtCgtT33AY.610.000314
ORF1ab/nsp31229V1229VgtCgtT33B.1.1600.000094
ORF1ab/nsp31229V1229VgtCgtT33B.1.36.80.003
ORF1ab/nsp31229V1229VgtCgtT22A.23.10.001408
ORF1ab/nsp31229V1229VgtCgtA22AY.1050.001286
ORF1ab/nsp31229V1229VgtCgtT22AY.260.000057
ORF1ab/nsp31229V1229VgtCgtT22AY.430.000009
ORF1ab/nsp31229V1229VgtCgtT22AY.540.000191
ORF1ab/nsp31229V1229VgtCgtT22AY.75.10.000361
ORF1ab/nsp31229V1229VgtCgtT22AY.980.000158
ORF1ab/nsp31229V1229VgtCgtT22AY.99.10.003106
ORF1ab/nsp31229V1229VgtCgtT22B.1.1.250.001137
ORF1ab/nsp31229V1229VgtCgtT22B.1.177.110.003396
ORF1ab/nsp31229V1229VgtCgtA22B.1.2350.005038
ORF1ab/nsp31229V1229VgtCgtA12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtT12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtT22B.1.3780.013699
ORF1ab/nsp31229V1229VgtCgtT22B.1.4290.000047
ORF1ab/nsp31229V1229VgtCgtT22B.1.4510.016393
ORF1ab/nsp31229V1229VgtCgtT22B.1.466.20.000782
ORF1ab/nsp31229V1229VgtCgtT22B.1.5260.000047
ORF1ab/nsp31229V1229VgtCgtT22Q.80.00033
ORF1ab/nsp31229V1229VgtCgtT11A.10.000282
ORF1ab/nsp31229V1229VgtCgtT11A.20.000662
ORF1ab/nsp31229V1229VgtCgtT11AU.30.00211
ORF1ab/nsp31229V1229VgtCgtT11AY.1110.000183
ORF1ab/nsp31229V1229VgtCgtT11AY.1130.000142
ORF1ab/nsp31229V1229VgtCgtT11AY.1170.000085
ORF1ab/nsp31229V1229VgtCgtA11AY.130.000161
ORF1ab/nsp31229V1229VgtCgtT11AY.140.000088
ORF1ab/nsp31229V1229VgtCgtT11AY.290.000016
ORF1ab/nsp31229V1229VgtCgtT11AY.3.10.000085
ORF1ab/nsp31229V1229VgtCgtT11AY.330.000067
ORF1ab/nsp31229V1229VgtCgtA11AY.34.10.00051
ORF1ab/nsp31229V1229VgtCgtT11AY.39.10.00004
ORF1ab/nsp31229V1229VgtCgtT11AY.4.20.000022
ORF1ab/nsp31229V1229VgtCgtT11AY.460.000104
ORF1ab/nsp31229V1229VgtCgtT11AY.470.000031
ORF1ab/nsp31229V1229VgtCgtT11AY.5.40.000277
ORF1ab/nsp31229V1229VgtCgtA11AY.520.000814
ORF1ab/nsp31229V1229VgtCgtT11AY.690.000187
ORF1ab/nsp31229V1229VgtCgtT11AY.710.000475
ORF1ab/nsp31229V1229VgtCgtT11AY.880.000884
ORF1ab/nsp31229V1229VgtCgtT11AY.90.000068
ORF1ab/nsp31229V1229VgtCgtT11AY.9.20.000037
ORF1ab/nsp31229V1229VgtCgtT11AY.920.000287
ORF1ab/nsp31229V1229VgtCgtT11B0.000128
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.1170.009709
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp31229V1229VgtCgtG11B.1.1.2630.001558
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.280.000311
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3180.000302
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3260.001761
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.330.000421
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3810.04
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.390.00051
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.4040.015873
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.4340.000349
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.700.000341
ORF1ab/nsp31229V1229VgtCgtT11B.1.160.140.002119
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.510.004566
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.690.001484
ORF1ab/nsp31229V1229VgtCgtT11B.1.1950.005025
ORF1ab/nsp31229V1229VgtCgtA11B.1.2580.000067
ORF1ab/nsp31229V1229VgtCgtT11B.1.3190.003049
ORF1ab/nsp31229V1229VgtCgtT11B.1.3250.006897
ORF1ab/nsp31229V1229VgtCgtA11B.1.351.30.000876
ORF1ab/nsp31229V1229VgtCgtT11B.1.3690.000285
ORF1ab/nsp31229V1229VgtCgtT11B.1.4250.002994
ORF1ab/nsp31229V1229VgtCgtT11B.1.5090.000866
ORF1ab/nsp31229V1229VgtCgtT11B.1.5250.000113
ORF1ab/nsp31229V1229VgtCgtT11B.1.5460.003704
ORF1ab/nsp31229V1229VgtCgtT11B.1.5510.00129
ORF1ab/nsp31229V1229VgtCgtA11B.1.5600.00463
ORF1ab/nsp31229V1229VgtCgtT11B.1.5750.000303
ORF1ab/nsp31229V1229VgtCgtT11B.1.5960.000087
ORF1ab/nsp31229V1229VgtCgtA11B.1.6230.000536
ORF1ab/nsp31229V1229VgtCgtT11D.20.000075
ORF1ab/nsp31229V1229VgtCgtT11N.50.001767
ORF1ab/nsp31229V1229VgtCgtA11P.20.000187
ORF1ab/nsp31229V1229VgtCgtT11P.30.001595
ORF1ab/nsp31229V1229VgtCgtT11W.40.001351