CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 976 | T976I | T1794I | nonsyn | aCa | aTa | 1924 | 1924 | 1 | 5645-5647 |
Details of the mutation T976I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1924 | 1924 | All | 0.000368 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 578 | 578 | AY.4 | 0.0009 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 555 | 555 | B.1.1.7 | 0.000497 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 89 | 89 | AY.103 | 0.000553 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 67 | 67 | AY.43 | 0.000297 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 57 | 57 | U.3 | 0.220077 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 34 | 34 | AY.27 | 0.002201 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 22 | 22 | P.1.3 | 0.758621 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 20 | 20 | B.1.177.5 | 0.024845 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 12 | 12 | B.1.621.1 | 0.00607 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 8 | 8 | B.1.241 | 0.006494 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 7 | 7 | B.1.177.44 | 0.003633 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 7 | 7 | W.3 | 0.036842 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | C.36.1 | 0.020747 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 4 | 4 | N.7 | 0.117647 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | B.1.595.4 | 0.014599 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 976 | T976I | aCa | aTa | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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