CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T970M

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3970T970MT1788MnonsynaCgaTg5234523415627-5629

Details of the mutation T970M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3970T970MaCgaTg52345234All0.001001
ORF1ab/nsp3970T970MaCgaTg900900B.1.1.70.000806
ORF1ab/nsp3970T970MaCgaTg612612AY.40.000953
ORF1ab/nsp3970T970MaCgaTg492492B.1.20.004332
ORF1ab/nsp3970T970MaCgaTg441441B.1.1.5190.017513
ORF1ab/nsp3970T970MaCgaTg425425AY.440.002587
ORF1ab/nsp3970T970MaCgaTg268268AY.390.006623
ORF1ab/nsp3970T970MaCgaTg180180B.1.2210.012786
ORF1ab/nsp3970T970MaCgaTg175175B.1.617.20.000659
ORF1ab/nsp3970T970MaCgaTg162162AY.920.046538
ORF1ab/nsp3970T970MaCgaTg156156B.1.2430.010855
ORF1ab/nsp3970T970MaCgaTg7575AY.430.000332
ORF1ab/nsp3970T970MaCgaTg7070B.1.2580.004658
ORF1ab/nsp3970T970MaCgaTg6868B.1.177.70.01121
ORF1ab/nsp3970T970MaCgaTg6565AY.250.000391
ORF1ab/nsp3970T970MaCgaTg4747AY.1030.000292
ORF1ab/nsp3970T970MaCgaTg4646AY.30.000458
ORF1ab/nsp3970T970MaCgaTg4545B.10.000412
ORF1ab/nsp3970T970MaCgaTg4545B.1.10.000816
ORF1ab/nsp3970T970MaCgaTg4343B.1.5960.003747
ORF1ab/nsp3970T970MaCgaTg3838C.370.00441
ORF1ab/nsp3970T970MaCgaTg3636AY.1190.001271
ORF1ab/nsp3970T970MaCgaTg3636AY.50.000743
ORF1ab/nsp3970T970MaCgaTg3333P.10.00052
ORF1ab/nsp3970T970MaCgaTg3232AY.470.000995
ORF1ab/nsp3970T970MaCgaTg3131AY.1110.005678
ORF1ab/nsp3970T970MaCgaTg2929AY.1000.001334
ORF1ab/nsp3970T970MaCgaTg2626AY.1180.001629
ORF1ab/nsp3970T970MaCgaTg2525B.1.1770.000329
ORF1ab/nsp3970T970MaCgaTg2424AY.290.000379
ORF1ab/nsp3970T970MaCgaTg2323AY.1020.00061
ORF1ab/nsp3970T970MaCgaTg2323AY.200.000894
ORF1ab/nsp3970T970MaCgaTg2323B.1.4290.000541
ORF1ab/nsp3970T970MaCgaTg2323B.1.5090.019913
ORF1ab/nsp3970T970MaCgaTg2323B.1.6210.002036
ORF1ab/nsp3970T970MaCgaTg2222AY.4.20.000477
ORF1ab/nsp3970T970MaCgaTg1717B.1.5260.0004
ORF1ab/nsp3970T970MaCgaTg1414AY.230.000976
ORF1ab/nsp3970T970MaCgaTg1414AY.330.000935
ORF1ab/nsp3970T970MaCgaTg1414B.1.3510.000416
ORF1ab/nsp3970T970MaCgaTg1313AY.980.001027
ORF1ab/nsp3970T970MaCgaTg1212AY.450.00146
ORF1ab/nsp3970T970MaCgaTg1010B.1.438.10.001073
ORF1ab/nsp3970T970MaCgaTg1010P.1.150.002323
ORF1ab/nsp3970T970MaCgaTg99AY.3.10.000767
ORF1ab/nsp3970T970MaCgaTg99B.1.1.2510.071429
ORF1ab/nsp3970T970MaCgaTg99B.1.1.3160.008326
ORF1ab/nsp3970T970MaCgaTg88AY.420.000322
ORF1ab/nsp3970T970MaCgaTg88B.1.1.3180.002414
ORF1ab/nsp3970T970MaCgaTg88B.1.5950.002088
ORF1ab/nsp3970T970MaCgaTg77AY.9.20.000257
ORF1ab/nsp3970T970MaCgaTg77B.1.2340.000924
ORF1ab/nsp3970T970MaCgaTg66AY.340.000582
ORF1ab/nsp3970T970MaCgaTg66AY.610.000629
ORF1ab/nsp3970T970MaCgaTg66B.1.1.330.002525
ORF1ab/nsp3970T970MaCgaTg66B.1.5250.000679
ORF1ab/nsp3970T970MaCgaTg66B.1.6280.002114
ORF1ab/nsp3970T970MaCgaTg55AY.1200.000186
ORF1ab/nsp3970T970MaCgaTg55AY.120.10.001605
ORF1ab/nsp3970T970MaCgaTg55AY.140.00044
ORF1ab/nsp3970T970MaCgaTg55AY.260.000142
ORF1ab/nsp3970T970MaCgaTg55AY.60.000206
ORF1ab/nsp3970T970MaCgaTg55AY.700.001043
ORF1ab/nsp3970T970MaCgaTg55AY.9.10.000419
ORF1ab/nsp3970T970MaCgaTg55AY.950.003805
ORF1ab/nsp3970T970MaCgaTg55B.1.1.1760.002197
ORF1ab/nsp3970T970MaCgaTg55B.1.1.630.001929
ORF1ab/nsp3970T970MaCgaTg55B.1.36.180.002101
ORF1ab/nsp3970T970MaCgaTg55P.1.100.001347
ORF1ab/nsp3970T970MaCgaTg44A.2.50.001996
ORF1ab/nsp3970T970MaCgaTg44AY.100.00212
ORF1ab/nsp3970T970MaCgaTg44AY.1170.000338
ORF1ab/nsp3970T970MaCgaTg44AY.360.000593
ORF1ab/nsp3970T970MaCgaTg44AY.46.60.000289
ORF1ab/nsp3970T970MaCgaTg44AY.750.000224
ORF1ab/nsp3970T970MaCgaTg44B.1.1.1110.058824
ORF1ab/nsp3970T970MaCgaTg44B.1.1.3060.001754
ORF1ab/nsp3970T970MaCgaTg44B.1.1.390.002039
ORF1ab/nsp3970T970MaCgaTg44B.1.258.170.000416
ORF1ab/nsp3970T970MaCgaTg44B.1.3110.001098
ORF1ab/nsp3970T970MaCgaTg44B.1.466.20.001565
ORF1ab/nsp3970T970MaCgaTg44P.1.120.001936
ORF1ab/nsp3970T970MaCgaTg44Q.30.00058
ORF1ab/nsp3970T970MaCgaTg33A.210.00831
ORF1ab/nsp3970T970MaCgaTg33AY.1050.001929
ORF1ab/nsp3970T970MaCgaTg33AY.1130.000427
ORF1ab/nsp3970T970MaCgaTg33AY.460.000312
ORF1ab/nsp3970T970MaCgaTg33AY.46.20.001906
ORF1ab/nsp3970T970MaCgaTg33B.1.1.2160.002671
ORF1ab/nsp3970T970MaCgaTg33B.1.1260.003827
ORF1ab/nsp3970T970MaCgaTg33B.1.1890.012876
ORF1ab/nsp3970T970MaCgaTg33B.1.360.000438
ORF1ab/nsp3970T970MaCgaTg33B.1.3690.000856
ORF1ab/nsp3970T970MaCgaTg33B.1.5770.002062
ORF1ab/nsp3970T970MaCgaTg22AY.116.10.000623
ORF1ab/nsp3970T970MaCgaTg22AY.1210.000271
ORF1ab/nsp3970T970MaCgaTg22AY.130.000322
ORF1ab/nsp3970T970MaCgaTg22AY.190.002281
ORF1ab/nsp3970T970MaCgaTg22AY.350.000466
ORF1ab/nsp3970T970MaCgaTg22AY.4.40.000818
ORF1ab/nsp3970T970MaCgaTg22AY.4.50.000215
ORF1ab/nsp3970T970MaCgaTg22AY.5.40.000553
ORF1ab/nsp3970T970MaCgaTg22AY.640.00119
ORF1ab/nsp3970T970MaCgaTg22AY.75.10.000361
ORF1ab/nsp3970T970MaCgaTg22AY.810.003984
ORF1ab/nsp3970T970MaCgaTg22AY.840.000875
ORF1ab/nsp3970T970MaCgaTg22AY.90.000135
ORF1ab/nsp3970T970MaCgaTg22AY.98.10.000097
ORF1ab/nsp3970T970MaCgaTg22B.1.1.2200.003717
ORF1ab/nsp3970T970MaCgaTg22B.1.1.280.000622
ORF1ab/nsp3970T970MaCgaTg22B.1.177.570.000562
ORF1ab/nsp3970T970MaCgaTg22B.1.177.820.000955
ORF1ab/nsp3970T970MaCgaTg22B.1.36.170.000988
ORF1ab/nsp3970T970MaCgaTg22B.1.4040.002604
ORF1ab/nsp3970T970MaCgaTg22B.1.4160.002538
ORF1ab/nsp3970T970MaCgaTg22B.1.4280.002041
ORF1ab/nsp3970T970MaCgaTg22B.1.5600.009259
ORF1ab/nsp3970T970MaCgaTg22B.1.5610.000794
ORF1ab/nsp3970T970MaCgaTg22B.1.617.10.000258
ORF1ab/nsp3970T970MaCgaTg22B.1.6200.001892
ORF1ab/nsp3970T970MaCgaTg22B.520.020202
ORF1ab/nsp3970T970MaCgaTg22D.20.00015
ORF1ab/nsp3970T970MaCgaTg22P.30.00319
ORF1ab/nsp3970T970MaCgaTg22Q.80.00033
ORF1ab/nsp3970T970MaCgaTg22R.10.00018
ORF1ab/nsp3970T970MaCgaTg11A0.000387
ORF1ab/nsp3970T970MaCgaTg11AY.1080.001103
ORF1ab/nsp3970T970MaCgaTg11AY.160.00038
ORF1ab/nsp3970T970MaCgaTg11AY.16.10.00047
ORF1ab/nsp3970T970MaCgaTg11AY.270.000065
ORF1ab/nsp3970T970MaCgaTg11AY.300.000396
ORF1ab/nsp3970T970MaCgaTg11AY.320.000532
ORF1ab/nsp3970T970MaCgaTg11AY.39.10.00004
ORF1ab/nsp3970T970MaCgaTg11AY.4.2.10.000149
ORF1ab/nsp3970T970MaCgaTg11AY.46.10.001027
ORF1ab/nsp3970T970MaCgaTg11AY.46.40.000165
ORF1ab/nsp3970T970MaCgaTg11AY.5.30.000337
ORF1ab/nsp3970T970MaCgaTg11AY.500.000799
ORF1ab/nsp3970T970MaCgaTg11AY.540.000095
ORF1ab/nsp3970T970MaCgaTg11AY.650.000533
ORF1ab/nsp3970T970MaCgaTg11AY.660.00107
ORF1ab/nsp3970T970MaCgaTg11AY.70.000196
ORF1ab/nsp3970T970MaCgaTg11AY.7.10.000113
ORF1ab/nsp3970T970MaCgaTg11AY.720.001361
ORF1ab/nsp3970T970MaCgaTg11AY.740.000116
ORF1ab/nsp3970T970MaCgaTg11AY.770.001127
ORF1ab/nsp3970T970MaCgaTg11AY.870.000833
ORF1ab/nsp3970T970MaCgaTg11AY.91.10.004065
ORF1ab/nsp3970T970MaCgaTg11B0.000128
ORF1ab/nsp3970T970MaCgaTg11B.1.1.10.000327
ORF1ab/nsp3970T970MaCgaTg11B.1.1.270.00565
ORF1ab/nsp3970T970MaCgaTg11B.1.1.2860.002899
ORF1ab/nsp3970T970MaCgaTg11B.1.1.3490.010309
ORF1ab/nsp3970T970MaCgaTg11B.1.1.370.000193
ORF1ab/nsp3970T970MaCgaTg11B.1.1.3700.012658
ORF1ab/nsp3970T970MaCgaTg11B.1.1.4200.001006
ORF1ab/nsp3970T970MaCgaTg11B.1.1.610.008772
ORF1ab/nsp3970T970MaCgaTg11B.1.130.002375
ORF1ab/nsp3970T970MaCgaTg11B.1.1470.000756
ORF1ab/nsp3970T970MaCgaTg11B.1.1490.003425
ORF1ab/nsp3970T970MaCgaTg11B.1.177.170.000821
ORF1ab/nsp3970T970MaCgaTg11B.1.177.40.000211
ORF1ab/nsp3970T970MaCgaTg11B.1.177.480.003125
ORF1ab/nsp3970T970MaCgaTg11B.1.177.750.001041
ORF1ab/nsp3970T970MaCgaTg11B.1.177.810.000189
ORF1ab/nsp3970T970MaCgaTg11B.1.1800.05
ORF1ab/nsp3970T970MaCgaTg11B.1.2010.005682
ORF1ab/nsp3970T970MaCgaTg11B.1.221.40.004167
ORF1ab/nsp3970T970MaCgaTg11B.1.36.190.009259
ORF1ab/nsp3970T970MaCgaTg11B.1.36.290.000517
ORF1ab/nsp3970T970MaCgaTg11B.1.3750.00082
ORF1ab/nsp3970T970MaCgaTg11B.1.3960.000706
ORF1ab/nsp3970T970MaCgaTg11B.1.4090.000781
ORF1ab/nsp3970T970MaCgaTg11B.1.4200.010417
ORF1ab/nsp3970T970MaCgaTg11B.1.4700.001404
ORF1ab/nsp3970T970MaCgaTg11B.1.5370.02
ORF1ab/nsp3970T970MaCgaTg11B.1.5560.007519
ORF1ab/nsp3970T970MaCgaTg11B.1.5650.00081
ORF1ab/nsp3970T970MaCgaTg11B.1.5680.001111
ORF1ab/nsp3970T970MaCgaTg11B.1.5820.000491
ORF1ab/nsp3970T970MaCgaTg11B.1.6090.000479
ORF1ab/nsp3970T970MaCgaTg11B.1.9.40.006135
ORF1ab/nsp3970T970MaCgaTg11B.6.60.000889
ORF1ab/nsp3970T970MaCgaTg11N.30.005814
ORF1ab/nsp3970T970MaCgaTg11P.1.170.000162
ORF1ab/nsp3970T970MaCgaTg11Q.20.000613
ORF1ab/nsp3970T970MaCgaTg11U.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.