CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T970A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3970T970AT1788AnonsynAcgGcg99940.9494955627-5629
ORF1ab/nsp3970T970AT1788AnonsynAcGGcT9930.0303035627-5629
ORF1ab/nsp3970T970AT1788AnonsynAcGGcA9920.0202025627-5629

Details of the mutation T970A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3970T970AAcgGcg9499All0.000018
ORF1ab/nsp3970T970AAcGGcT399All0.000001
ORF1ab/nsp3970T970AAcGGcA299All0
ORF1ab/nsp3970T970AAcgGcg2832B.1.1.70.000025
ORF1ab/nsp3970T970AAcGGcT232B.1.1.70.000002
ORF1ab/nsp3970T970AAcGGcA232B.1.1.70.000002
ORF1ab/nsp3970T970AAcgGcg2222AY.250.000132
ORF1ab/nsp3970T970AAcgGcg99B.1.2580.000599
ORF1ab/nsp3970T970AAcgGcg33AY.1020.00008
ORF1ab/nsp3970T970AAcgGcg33B.1.5820.001472
ORF1ab/nsp3970T970AAcgGcg33P.1.140.000143
ORF1ab/nsp3970T970AAcgGcg22AY.1030.000012
ORF1ab/nsp3970T970AAcgGcg22AY.30.00002
ORF1ab/nsp3970T970AAcgGcg22AY.390.000049
ORF1ab/nsp3970T970AAcgGcg22B.10.000018
ORF1ab/nsp3970T970AAcgGcg22B.1.1770.000026
ORF1ab/nsp3970T970AAcgGcg22B.1.20.000018
ORF1ab/nsp3970T970AAcgGcg22B.1.3510.000059
ORF1ab/nsp3970T970AAcgGcg11AY.1190.000035
ORF1ab/nsp3970T970AAcgGcg11AY.200.000039
ORF1ab/nsp3970T970AAcgGcg11AY.360.000148
ORF1ab/nsp3970T970AAcgGcg11AY.40.000002
ORF1ab/nsp3970T970AAcgGcg11AY.440.000006
ORF1ab/nsp3970T970AAcgGcg11AY.470.000031
ORF1ab/nsp3970T970AAcgGcg11AY.740.000116
ORF1ab/nsp3970T970AAcgGcg11AY.90.000068
ORF1ab/nsp3970T970AAcgGcg11AY.9.10.000084
ORF1ab/nsp3970T970AAcGGcT11B.1.1600.000031
ORF1ab/nsp3970T970AAcgGcg11B.1.36.360.000602
ORF1ab/nsp3970T970AAcgGcg11B.1.4480.002625
ORF1ab/nsp3970T970AAcgGcg11B.1.5750.000303

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.