CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 955 | T955T | T1773T | syn | acA | acG | 222532 | 220256 | 0.989772 | 5582-5584 |
ORF1ab/nsp3 | 955 | T955T | T1773T | syn | acA | acT | 222532 | 2175 | 0.00977388 | 5582-5584 |
ORF1ab/nsp3 | 955 | T955T | T1773T | syn | acA | acC | 222532 | 101 | 0.000453867 | 5582-5584 |
Details of the mutation T955T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 220256 | 222532 | All | 0.042127 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2175 | 222532 | All | 0.000416 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 101 | 222532 | All | 0.000019 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 32912 | 32989 | AY.26 | 0.931744 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 75 | 32989 | AY.26 | 0.002123 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 2 | 32989 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 30449 | 30464 | AY.47 | 0.947121 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 15 | 30464 | AY.47 | 0.000467 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 21908 | 21960 | AY.9.2 | 0.804672 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 52 | 21960 | AY.9.2 | 0.00191 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 16153 | 16164 | AY.75 | 0.90493 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 11 | 16164 | AY.75 | 0.000616 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 15411 | 15416 | AY.27 | 0.997411 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 5 | 15416 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 14514 | 14538 | AY.9 | 0.981073 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 24 | 14538 | AY.9 | 0.001622 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 11473 | 11480 | AY.9.1 | 0.960566 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 7 | 11480 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 10597 | 10816 | B.1.617.2 | 0.039902 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 219 | 10816 | B.1.617.2 | 0.000825 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8020 | 8218 | AY.61 | 0.840319 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 198 | 8218 | AY.61 | 0.020746 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8201 | 8205 | AY.74 | 0.948421 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 8205 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 5049 | 5050 | AY.69 | 0.942505 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 5050 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4734 | 4782 | AY.75.1 | 0.853588 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 48 | 4782 | AY.75.1 | 0.008655 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4532 | 4536 | AY.70 | 0.944954 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 4536 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2838 | 2844 | AY.37 | 0.896966 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 6 | 2844 | AY.37 | 0.001896 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2755 | 2755 | AY.2 | 0.981125 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2652 | 2656 | AY.68 | 0.725979 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 2656 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2452 | 2452 | AY.63 | 0.948549 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2141 | 2211 | AY.24 | 0.922845 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 69 | 2211 | AY.24 | 0.029741 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 2211 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1864 | 1866 | AY.67 | 0.865367 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 1866 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1860 | 1864 | AY.62 | 0.810458 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 1864 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1744 | 1749 | AY.71 | 0.828504 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 5 | 1749 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1632 | 1633 | AY.10 | 0.864865 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 1633 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1528 | 1530 | AY.38 | 0.762856 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 1530 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1510 | 1510 | AY.65 | 0.804904 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1428 | 1430 | AY.59 | 0.756356 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 1430 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1426 | 1426 | AY.64 | 0.84881 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1400 | 1404 | AY.57 | 0.918635 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 1404 | AY.57 | 0.002625 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 936 | 961 | AY.60 | 0.878049 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 25 | 961 | AY.60 | 0.023452 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 854 | 854 | AY.66 | 0.913369 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 819 | 819 | AY.73 | 0.54491 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 745 | 745 | AY.58 | 0.676044 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 691 | 691 | AY.11 | 0.925033 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 689 | 691 | AY.72 | 0.937415 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 691 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 601 | 602 | AY.44 | 0.003658 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 602 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 482 | 506 | AY.9.2.1 | 0.952569 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 24 | 506 | AY.9.2.1 | 0.047431 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 472 | 476 | AY.55 | 0.433028 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 476 | AY.55 | 0.00367 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 467 | 467 | AY.28 | 0.882798 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 391 | 392 | AY.56 | 0.627608 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 392 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 318 | 320 | AY.13 | 0.051191 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 320 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 301 | 305 | AY.16.1 | 0.141447 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 305 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 248 | 255 | AY.43 | 0.001099 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 4 | 255 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 3 | 255 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 178 | 179 | AY.19 | 0.202965 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 179 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 162 | 163 | AY.39 | 0.004003 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 163 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 140 | 141 | AY.103 | 0.000869 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 1 | 141 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 121 | 121 | AY.25 | 0.000728 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 117 | 117 | AY.20 | 0.004547 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 105 | 105 | B.1 | 0.000962 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 96 | 97 | AY.48 | 0.044651 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 97 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 88 | 88 | AY.113 | 0.01253 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 75 | 75 | AY.54 | 0.007151 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 68 | 70 | AY.110 | 0.007663 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 70 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 68 | 70 | AY.52 | 0.055375 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 2 | 70 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 55 | 55 | AY.117 | 0.004648 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 53 | 53 | AY.45 | 0.006449 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 46 | 47 | AY.16 | 0.017464 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 47 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 45 | 45 | AY.98.1 | 0.002179 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 32 | 45 | B.1.2 | 0.000282 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 13 | 45 | B.1.2 | 0.000114 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 42 | 42 | AY.120.2 | 0.053985 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 39 | 39 | AY.21 | 0.074004 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 39 | 39 | AY.93 | 0.01065 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 39 | 39 | AY.98 | 0.003081 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 35 | 37 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 2 | 37 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 35 | 35 | AY.32 | 0.018637 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 28 | 34 | AY.121 | 0.003789 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 6 | 34 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 31 | 33 | AY.118 | 0.001942 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 2 | 33 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 33 | 33 | B | 0.004218 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 30 | 30 | AY.100 | 0.00138 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 30 | 30 | AY.105 | 0.019293 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 29 | 29 | AY.4.2.1 | 0.004321 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 22 | 23 | AY.119 | 0.000777 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 1 | 23 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 23 | 23 | AY.77 | 0.02593 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 21 | 22 | AY.46.2 | 0.013342 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 22 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 21 | 21 | AY.46 | 0.002186 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 21 | 21 | AY.5.3 | 0.007085 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 21 | 21 | AY.50 | 0.016787 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 18 | 18 | AY.23 | 0.001255 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 16 | 16 | AY.33 | 0.001068 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 15 | 15 | AY.53 | 0.004313 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 15 | 15 | AY.86 | 0.012448 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 13 | 13 | AY.1 | 0.005144 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 13 | 13 | AY.88 | 0.011494 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 12 | 12 | AY.91 | 0.008766 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 10 | 11 | AY.92 | 0.002873 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 1 | 11 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 10 | 10 | AY.108 | 0.011025 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 10 | 10 | AY.114 | 0.002311 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 9 | 9 | AY.46.1 | 0.00924 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8 | 8 | AY.40 | 0.007715 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8 | 8 | AY.87 | 0.006661 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 6 | 6 | AY.49 | 0.019169 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 6 | 6 | AY.81 | 0.011952 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 6 | 6 | B.1.361 | 0.007732 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 5 | 5 | AY.95 | 0.003805 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp3 | 955 | T955T | acA | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 955 | T955T | acA | acT | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 955 | T955T | acA | acG | 1 | 1 | P.5 | 0.013699 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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