CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T942T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3942T942TT1760TsynacAacT10309190.8922335543-5545
ORF1ab/nsp3942T942TT1760TsynacAacG10301040.1009715543-5545
ORF1ab/nsp3942T942TT1760TsynacAacC103070.006796125543-5545

Details of the mutation T942T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3942T942TacAacT9191030All0.000176
ORF1ab/nsp3942T942TacAacG1041030All0.00002
ORF1ab/nsp3942T942TacAacC71030All0.000001
ORF1ab/nsp3942T942TacAacT770797B.1.1.70.000689
ORF1ab/nsp3942T942TacAacG27797B.1.1.70.000024
ORF1ab/nsp3942T942TacAacT3939AY.1110.007143
ORF1ab/nsp3942T942TacAacT3535Q.10.004421
ORF1ab/nsp3942T942TacAacG2021AY.440.000122
ORF1ab/nsp3942T942TacAacT121AY.440.000006
ORF1ab/nsp3942T942TacAacT1617AY.30.000159
ORF1ab/nsp3942T942TacAacC117AY.30.00001
ORF1ab/nsp3942T942TacAacG711AY.40.000011
ORF1ab/nsp3942T942TacAacT311AY.40.000005
ORF1ab/nsp3942T942TacAacC111AY.40.000002
ORF1ab/nsp3942T942TacAacG711B.1.10.000127
ORF1ab/nsp3942T942TacAacT411B.1.10.000073
ORF1ab/nsp3942T942TacAacT47AY.1020.000106
ORF1ab/nsp3942T942TacAacG27AY.1020.000053
ORF1ab/nsp3942T942TacAacC17AY.1020.000027
ORF1ab/nsp3942T942TacAacT67AY.430.000027
ORF1ab/nsp3942T942TacAacG17AY.430.000004
ORF1ab/nsp3942T942TacAacT77B.1.5240.009845
ORF1ab/nsp3942T942TacAacT66B.1.177.210.000459
ORF1ab/nsp3942T942TacAacG45AY.1030.000025
ORF1ab/nsp3942T942TacAacC15AY.1030.000006
ORF1ab/nsp3942T942TacAacT34B.1.1770.00004
ORF1ab/nsp3942T942TacAacG14B.1.1770.000013
ORF1ab/nsp3942T942TacAacT34B.1.617.20.000011
ORF1ab/nsp3942T942TacAacG14B.1.617.20.000004
ORF1ab/nsp3942T942TacAacG44P.1.150.000929
ORF1ab/nsp3942T942TacAacG33AY.330.0002
ORF1ab/nsp3942T942TacAacG33AY.780.004622
ORF1ab/nsp3942T942TacAacG23B.10.000018
ORF1ab/nsp3942T942TacAacT13B.10.000009
ORF1ab/nsp3942T942TacAacG33B.1.3110.000824
ORF1ab/nsp3942T942TacAacT33B.1.5750.00091
ORF1ab/nsp3942T942TacAacG12A.210.00277
ORF1ab/nsp3942T942TacAacT12A.210.00277
ORF1ab/nsp3942T942TacAacT12AY.1000.000046
ORF1ab/nsp3942T942TacAacG12AY.1000.000046
ORF1ab/nsp3942T942TacAacG22AY.250.000012
ORF1ab/nsp3942T942TacAacT12AY.460.000104
ORF1ab/nsp3942T942TacAacG12AY.460.000104
ORF1ab/nsp3942T942TacAacG12AY.90.000068
ORF1ab/nsp3942T942TacAacC12AY.90.000068
ORF1ab/nsp3942T942TacAacG12B.1.1600.000031
ORF1ab/nsp3942T942TacAacT12B.1.1600.000031
ORF1ab/nsp3942T942TacAacT110.055556
ORF1ab/nsp3942T942TacAacT11A.2.40.003367
ORF1ab/nsp3942T942TacAacG11AY.1130.000142
ORF1ab/nsp3942T942TacAacG11AY.1180.000063
ORF1ab/nsp3942T942TacAacG11AY.1190.000035
ORF1ab/nsp3942T942TacAacT11AY.230.00007
ORF1ab/nsp3942T942TacAacT11AY.23.10.000417
ORF1ab/nsp3942T942TacAacT11AY.270.000065
ORF1ab/nsp3942T942TacAacG11AY.290.000016
ORF1ab/nsp3942T942TacAacT11AY.4.2.10.000149
ORF1ab/nsp3942T942TacAacG11AY.470.000031
ORF1ab/nsp3942T942TacAacC11AY.50.000021
ORF1ab/nsp3942T942TacAacT11AY.60.000041
ORF1ab/nsp3942T942TacAacT11AY.650.000533
ORF1ab/nsp3942T942TacAacT11AY.9.20.000037
ORF1ab/nsp3942T942TacAacG11B.1.1.2530.002506
ORF1ab/nsp3942T942TacAacT11B.1.1.280.000311
ORF1ab/nsp3942T942TacAacT11B.1.1.2980.000862
ORF1ab/nsp3942T942TacAacG11B.1.1.4330.001425
ORF1ab/nsp3942T942TacAacT11B.1.177.440.000519
ORF1ab/nsp3942T942TacAacT11B.1.177.870.000728
ORF1ab/nsp3942T942TacAacC11B.1.2220.001692
ORF1ab/nsp3942T942TacAacT11B.1.3400.004292
ORF1ab/nsp3942T942TacAacG11B.1.3510.00003
ORF1ab/nsp3942T942TacAacG11B.1.4110.003704
ORF1ab/nsp3942T942TacAacG11B.1.617.10.000129
ORF1ab/nsp3942T942TacAacG11C.36.30.000567
ORF1ab/nsp3942T942TacAacG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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