CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T942I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3942T942IT1760InonsynaCaaTa4082408215543-5545

Details of the mutation T942I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3942T942IaCaaTa40824082All0.000781
ORF1ab/nsp3942T942IaCaaTa14961496AY.40.002328
ORF1ab/nsp3942T942IaCaaTa543543AY.830.936207
ORF1ab/nsp3942T942IaCaaTa483483B.1.1.70.000432
ORF1ab/nsp3942T942IaCaaTa130130B.1.617.20.00049
ORF1ab/nsp3942T942IaCaaTa124124AY.440.000755
ORF1ab/nsp3942T942IaCaaTa103103AY.30.001024
ORF1ab/nsp3942T942IaCaaTa8888AY.250.000529
ORF1ab/nsp3942T942IaCaaTa8484B.1.258.170.008734
ORF1ab/nsp3942T942IaCaaTa7272AY.1030.000447
ORF1ab/nsp3942T942IaCaaTa6464AY.450.007788
ORF1ab/nsp3942T942IaCaaTa5858AY.430.000257
ORF1ab/nsp3942T942IaCaaTa5757B.1.20.000502
ORF1ab/nsp3942T942IaCaaTa5555A.251
ORF1ab/nsp3942T942IaCaaTa4545B.1.1770.000593
ORF1ab/nsp3942T942IaCaaTa3434B.10.000311
ORF1ab/nsp3942T942IaCaaTa3131B.1.30.081152
ORF1ab/nsp3942T942IaCaaTa2727B.1.177.50.03354
ORF1ab/nsp3942T942IaCaaTa2323AY.1090.017012
ORF1ab/nsp3942T942IaCaaTa1818AY.1020.000477
ORF1ab/nsp3942T942IaCaaTa1818AY.240.007759
ORF1ab/nsp3942T942IaCaaTa1818B.1.1590.219512
ORF1ab/nsp3942T942IaCaaTa1717AY.340.001648
ORF1ab/nsp3942T942IaCaaTa1616B.1.10.00029
ORF1ab/nsp3942T942IaCaaTa1515AY.3.10.001279
ORF1ab/nsp3942T942IaCaaTa1515AY.390.000371
ORF1ab/nsp3942T942IaCaaTa1515P.10.000236
ORF1ab/nsp3942T942IaCaaTa1212AY.290.000189
ORF1ab/nsp3942T942IaCaaTa1111AY.260.000311
ORF1ab/nsp3942T942IaCaaTa1111B.1.2430.000765
ORF1ab/nsp3942T942IaCaaTa1010AY.200.000389
ORF1ab/nsp3942T942IaCaaTa1010B.1.1.2220.00204
ORF1ab/nsp3942T942IaCaaTa1010B.1.5260.000235
ORF1ab/nsp3942T942IaCaaTa1010B.4.80.714286
ORF1ab/nsp3942T942IaCaaTa99B.1.1.4210.272727
ORF1ab/nsp3942T942IaCaaTa88AY.720.010884
ORF1ab/nsp3942T942IaCaaTa88B.1.1600.00025
ORF1ab/nsp3942T942IaCaaTa88B.1.3110.002197
ORF1ab/nsp3942T942IaCaaTa88B.1.3510.000238
ORF1ab/nsp3942T942IaCaaTa88B.1.6280.002819
ORF1ab/nsp3942T942IaCaaTa77AY.1170.000592
ORF1ab/nsp3942T942IaCaaTa77AY.420.000282
ORF1ab/nsp3942T942IaCaaTa77B.1.4270.000353
ORF1ab/nsp3942T942IaCaaTa77B.1.595.10.040936
ORF1ab/nsp3942T942IaCaaTa66AY.640.003571
ORF1ab/nsp3942T942IaCaaTa66AY.750.000336
ORF1ab/nsp3942T942IaCaaTa66AY.910.004383
ORF1ab/nsp3942T942IaCaaTa66AZ.10.005204
ORF1ab/nsp3942T942IaCaaTa66B.1.4290.000141
ORF1ab/nsp3942T942IaCaaTa66B.1.466.20.002347
ORF1ab/nsp3942T942IaCaaTa55AY.1000.00023
ORF1ab/nsp3942T942IaCaaTa55AY.1050.003215
ORF1ab/nsp3942T942IaCaaTa55B.1.1.10.001633
ORF1ab/nsp3942T942IaCaaTa55B.1.1.330.002104
ORF1ab/nsp3942T942IaCaaTa55B.1.1.5190.000199
ORF1ab/nsp3942T942IaCaaTa55B.1.2580.000333
ORF1ab/nsp3942T942IaCaaTa44AY.1180.000251
ORF1ab/nsp3942T942IaCaaTa44AY.4.20.000087
ORF1ab/nsp3942T942IaCaaTa44AY.46.60.000289
ORF1ab/nsp3942T942IaCaaTa44AY.90.00027
ORF1ab/nsp3942T942IaCaaTa44B.1.110.30.002874
ORF1ab/nsp3942T942IaCaaTa44B.1.2060.003263
ORF1ab/nsp3942T942IaCaaTa44B.1.2340.000528
ORF1ab/nsp3942T942IaCaaTa44B.1.3460.005242
ORF1ab/nsp3942T942IaCaaTa44B.1.5580.018265
ORF1ab/nsp3942T942IaCaaTa44B.1.5960.000349
ORF1ab/nsp3942T942IaCaaTa44B.1.6210.000354
ORF1ab/nsp3942T942IaCaaTa44B.60.00364
ORF1ab/nsp3942T942IaCaaTa33AY.1190.000106
ORF1ab/nsp3942T942IaCaaTa33AY.46.40.000494
ORF1ab/nsp3942T942IaCaaTa33AY.470.000093
ORF1ab/nsp3942T942IaCaaTa33AY.50.000062
ORF1ab/nsp3942T942IaCaaTa33AY.930.000819
ORF1ab/nsp3942T942IaCaaTa33B0.000383
ORF1ab/nsp3942T942IaCaaTa33B.1.1.280.000934
ORF1ab/nsp3942T942IaCaaTa33B.1.1.630.001157
ORF1ab/nsp3942T942IaCaaTa33C.160.003181
ORF1ab/nsp3942T942IaCaaTa33Q.70.003333
ORF1ab/nsp3942T942IaCaaTa22A.20.001324
ORF1ab/nsp3942T942IaCaaTa22A.270.003311
ORF1ab/nsp3942T942IaCaaTa22AY.1130.000285
ORF1ab/nsp3942T942IaCaaTa22AY.1210.000271
ORF1ab/nsp3942T942IaCaaTa22AY.330.000134
ORF1ab/nsp3942T942IaCaaTa22AY.360.000296
ORF1ab/nsp3942T942IaCaaTa22AY.460.000208
ORF1ab/nsp3942T942IaCaaTa22AY.60.000082
ORF1ab/nsp3942T942IaCaaTa22AY.75.10.000361
ORF1ab/nsp3942T942IaCaaTa22AY.850.000854
ORF1ab/nsp3942T942IaCaaTa22AY.9.20.000073
ORF1ab/nsp3942T942IaCaaTa22AY.980.000158
ORF1ab/nsp3942T942IaCaaTa22AY.98.10.000097
ORF1ab/nsp3942T942IaCaaTa22B.1.1.1440.057143
ORF1ab/nsp3942T942IaCaaTa22B.1.1.1530.002191
ORF1ab/nsp3942T942IaCaaTa22B.1.1.2140.000111
ORF1ab/nsp3942T942IaCaaTa22B.1.1.2250.014388
ORF1ab/nsp3942T942IaCaaTa22B.1.1.260.010471
ORF1ab/nsp3942T942IaCaaTa22B.1.1.370.000386
ORF1ab/nsp3942T942IaCaaTa22B.1.1.390.001019
ORF1ab/nsp3942T942IaCaaTa22B.1.1.4340.000697
ORF1ab/nsp3942T942IaCaaTa22B.1.1.4480.004065
ORF1ab/nsp3942T942IaCaaTa22B.1.1.4670.038462
ORF1ab/nsp3942T942IaCaaTa22B.1.177.590.032258
ORF1ab/nsp3942T942IaCaaTa22B.1.177.70.00033
ORF1ab/nsp3942T942IaCaaTa22B.1.177.870.001456
ORF1ab/nsp3942T942IaCaaTa22B.1.2390.002442
ORF1ab/nsp3942T942IaCaaTa22B.1.4090.001563
ORF1ab/nsp3942T942IaCaaTa22B.1.5750.000607
ORF1ab/nsp3942T942IaCaaTa22B.1.617.10.000258
ORF1ab/nsp3942T942IaCaaTa22B.530.023529
ORF1ab/nsp3942T942IaCaaTa22D.20.00015
ORF1ab/nsp3942T942IaCaaTa22Q.10.000253
ORF1ab/nsp3942T942IaCaaTa22Q.80.00033
ORF1ab/nsp3942T942IaCaaTa11A0.000387
ORF1ab/nsp3942T942IaCaaTa11A.190.009434
ORF1ab/nsp3942T942IaCaaTa11A.2.50.000499
ORF1ab/nsp3942T942IaCaaTa11A.2.5.20.001572
ORF1ab/nsp3942T942IaCaaTa11AY.1040.001984
ORF1ab/nsp3942T942IaCaaTa11AY.1060.000335
ORF1ab/nsp3942T942IaCaaTa11AY.1100.000113
ORF1ab/nsp3942T942IaCaaTa11AY.1160.000287
ORF1ab/nsp3942T942IaCaaTa11AY.1200.000037
ORF1ab/nsp3942T942IaCaaTa11AY.120.2.10.000498
ORF1ab/nsp3942T942IaCaaTa11AY.160.00038
ORF1ab/nsp3942T942IaCaaTa11AY.29.10.000221
ORF1ab/nsp3942T942IaCaaTa11AY.320.000532
ORF1ab/nsp3942T942IaCaaTa11AY.34.10.00051
ORF1ab/nsp3942T942IaCaaTa11AY.350.000233
ORF1ab/nsp3942T942IaCaaTa11AY.410.000294
ORF1ab/nsp3942T942IaCaaTa11AY.570.000656
ORF1ab/nsp3942T942IaCaaTa11AY.700.000209
ORF1ab/nsp3942T942IaCaaTa11AY.790.001211
ORF1ab/nsp3942T942IaCaaTa11AY.820.001357
ORF1ab/nsp3942T942IaCaaTa11AY.920.000287
ORF1ab/nsp3942T942IaCaaTa11AY.99.20.000092
ORF1ab/nsp3942T942IaCaaTa11B.1.1.1610.003534
ORF1ab/nsp3942T942IaCaaTa11B.1.1.1700.001247
ORF1ab/nsp3942T942IaCaaTa11B.1.1.2940.001266
ORF1ab/nsp3942T942IaCaaTa11B.1.1.3060.000438
ORF1ab/nsp3942T942IaCaaTa11B.1.1.3290.003846
ORF1ab/nsp3942T942IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp3942T942IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp3942T942IaCaaTa11B.1.1.3770.001381
ORF1ab/nsp3942T942IaCaaTa11B.1.1.410.006329
ORF1ab/nsp3942T942IaCaaTa11B.1.1.530.013699
ORF1ab/nsp3942T942IaCaaTa11B.1.1.890.006061
ORF1ab/nsp3942T942IaCaaTa11B.1.160.140.002119
ORF1ab/nsp3942T942IaCaaTa11B.1.177.120.000152
ORF1ab/nsp3942T942IaCaaTa11B.1.177.320.00135
ORF1ab/nsp3942T942IaCaaTa11B.1.177.380.010417
ORF1ab/nsp3942T942IaCaaTa11B.1.177.440.000519
ORF1ab/nsp3942T942IaCaaTa11B.1.177.730.000566
ORF1ab/nsp3942T942IaCaaTa11B.1.177.790.002342
ORF1ab/nsp3942T942IaCaaTa11B.1.1990.004132
ORF1ab/nsp3942T942IaCaaTa11B.1.214.10.02
ORF1ab/nsp3942T942IaCaaTa11B.1.2400.000216
ORF1ab/nsp3942T942IaCaaTa11B.1.2650.001271
ORF1ab/nsp3942T942IaCaaTa11B.1.3050.002151
ORF1ab/nsp3942T942IaCaaTa11B.1.36.160.001425
ORF1ab/nsp3942T942IaCaaTa11B.1.36.180.00042
ORF1ab/nsp3942T942IaCaaTa11B.1.36.290.000517
ORF1ab/nsp3942T942IaCaaTa11B.1.3670.000792
ORF1ab/nsp3942T942IaCaaTa11B.1.4740.001901
ORF1ab/nsp3942T942IaCaaTa11B.1.5240.001406
ORF1ab/nsp3942T942IaCaaTa11B.1.5610.000397
ORF1ab/nsp3942T942IaCaaTa11B.1.5640.000426
ORF1ab/nsp3942T942IaCaaTa11B.1.575.10.002439
ORF1ab/nsp3942T942IaCaaTa11B.1.5760.000907
ORF1ab/nsp3942T942IaCaaTa11B.1.5850.027778
ORF1ab/nsp3942T942IaCaaTa11B.1.6090.000479
ORF1ab/nsp3942T942IaCaaTa11B.1.6370.000073
ORF1ab/nsp3942T942IaCaaTa11B.1.940.027027
ORF1ab/nsp3942T942IaCaaTa11B.400.000364
ORF1ab/nsp3942T942IaCaaTa11B.550.00295
ORF1ab/nsp3942T942IaCaaTa11C.36.30.000567
ORF1ab/nsp3942T942IaCaaTa11N.90.005952
ORF1ab/nsp3942T942IaCaaTa11P.1.100.000269
ORF1ab/nsp3942T942IaCaaTa11P.1.120.000484
ORF1ab/nsp3942T942IaCaaTa11P.1.170.000162
ORF1ab/nsp3942T942IaCaaTa11P.1.17.10.000875
ORF1ab/nsp3942T942IaCaaTa11P.30.001595
ORF1ab/nsp3942T942IaCaaTa11R.10.00009
ORF1ab/nsp3942T942IaCaaTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.