CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T860T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3860T860TT1678TsynacTacC3191940.608155297-5299
ORF1ab/nsp3860T860TT1678TsynacTacA319740.2319755297-5299
ORF1ab/nsp3860T860TT1678TsynacTacG319510.1598755297-5299

Details of the mutation T860T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3860T860TacTacC194319All0.000037
ORF1ab/nsp3860T860TacTacA74319All0.000014
ORF1ab/nsp3860T860TacTacG51319All0.00001
ORF1ab/nsp3860T860TacTacC3148B.1.1.70.000028
ORF1ab/nsp3860T860TacTacA1748B.1.1.70.000015
ORF1ab/nsp3860T860TacTacC4144AY.40.000064
ORF1ab/nsp3860T860TacTacA244AY.40.000003
ORF1ab/nsp3860T860TacTacG144AY.40.000002
ORF1ab/nsp3860T860TacTacG2525B.1.1941
ORF1ab/nsp3860T860TacTacC1616AY.250.000096
ORF1ab/nsp3860T860TacTacA1415B.1.10.000254
ORF1ab/nsp3860T860TacTacG115B.1.10.000018
ORF1ab/nsp3860T860TacTacC914AY.430.00004
ORF1ab/nsp3860T860TacTacG514AY.430.000022
ORF1ab/nsp3860T860TacTacC1313AY.470.000404
ORF1ab/nsp3860T860TacTacC810B.1.617.20.00003
ORF1ab/nsp3860T860TacTacA210B.1.617.20.000008
ORF1ab/nsp3860T860TacTacC89AY.390.000198
ORF1ab/nsp3860T860TacTacA19AY.390.000025
ORF1ab/nsp3860T860TacTacG99AY.39.10.000357
ORF1ab/nsp3860T860TacTacC99AY.440.000055
ORF1ab/nsp3860T860TacTacA77B.1.5950.001827
ORF1ab/nsp3860T860TacTacA77B.1.6230.003755
ORF1ab/nsp3860T860TacTacA67P.10.000095
ORF1ab/nsp3860T860TacTacC17P.10.000016
ORF1ab/nsp3860T860TacTacC66AY.260.00017
ORF1ab/nsp3860T860TacTacC66AY.460.000624
ORF1ab/nsp3860T860TacTacC66AY.740.000694
ORF1ab/nsp3860T860TacTacG46B.10.000037
ORF1ab/nsp3860T860TacTacA26B.10.000018
ORF1ab/nsp3860T860TacTacC45B.1.4290.000094
ORF1ab/nsp3860T860TacTacA15B.1.4290.000024
ORF1ab/nsp3860T860TacTacA34B.1.1770.00004
ORF1ab/nsp3860T860TacTacC14B.1.1770.000013
ORF1ab/nsp3860T860TacTacC33AY.300.001187
ORF1ab/nsp3860T860TacTacA33B.1.6200.002838
ORF1ab/nsp3860T860TacTacC22AY.1020.000053
ORF1ab/nsp3860T860TacTacC22AY.290.000032
ORF1ab/nsp3860T860TacTacC22AY.730.001331
ORF1ab/nsp3860T860TacTacC22B.1.177.120.000303
ORF1ab/nsp3860T860TacTacG12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacC12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacG12B.1.20.000009
ORF1ab/nsp3860T860TacTacC12B.1.20.000009
ORF1ab/nsp3860T860TacTacA12B.1.3510.00003
ORF1ab/nsp3860T860TacTacC12B.1.3510.00003
ORF1ab/nsp3860T860TacTacC11AY.1030.000006
ORF1ab/nsp3860T860TacTacC11AY.1050.000643
ORF1ab/nsp3860T860TacTacC11AY.1110.000183
ORF1ab/nsp3860T860TacTacC11AY.1190.000035
ORF1ab/nsp3860T860TacTacC11AY.1210.000135
ORF1ab/nsp3860T860TacTacC11AY.200.000039
ORF1ab/nsp3860T860TacTacC11AY.4.2.10.000149
ORF1ab/nsp3860T860TacTacA11AY.420.00004
ORF1ab/nsp3860T860TacTacC11AY.5.40.000277
ORF1ab/nsp3860T860TacTacA11AY.520.000814
ORF1ab/nsp3860T860TacTacA11AY.750.000056
ORF1ab/nsp3860T860TacTacA11AY.80.000606
ORF1ab/nsp3860T860TacTacC11AY.9.20.000037
ORF1ab/nsp3860T860TacTacC11AY.980.000079
ORF1ab/nsp3860T860TacTacA11B.1.1.1760.000439
ORF1ab/nsp3860T860TacTacC11B.1.1.2140.000055
ORF1ab/nsp3860T860TacTacG11B.1.177.210.000076
ORF1ab/nsp3860T860TacTacA11B.1.177.510.004566
ORF1ab/nsp3860T860TacTacC11B.1.177.600.000218
ORF1ab/nsp3860T860TacTacC11B.1.2210.000071
ORF1ab/nsp3860T860TacTacC11B.1.2430.00007
ORF1ab/nsp3860T860TacTacC11B.1.4090.000781
ORF1ab/nsp3860T860TacTacC11B.1.466.20.000391
ORF1ab/nsp3860T860TacTacG11B.1.5250.000113
ORF1ab/nsp3860T860TacTacA11B.1.5380.008065
ORF1ab/nsp3860T860TacTacG11B.1.5800.004065
ORF1ab/nsp3860T860TacTacC11B.1.5960.000087
ORF1ab/nsp3860T860TacTacC11B.1.6000.005848
ORF1ab/nsp3860T860TacTacA11B.30.000831
ORF1ab/nsp3860T860TacTacC11P.1.140.000048
ORF1ab/nsp3860T860TacTacC11P.1.70.000319
ORF1ab/nsp3860T860TacTacG11Q.80.000165
ORF1ab/nsp3860T860TacTacC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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