CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T860T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3860T860TT1678TsynacTacC3191940.608155297-5299
ORF1ab/nsp3860T860TT1678TsynacTacA319740.2319755297-5299
ORF1ab/nsp3860T860TT1678TsynacTacG319510.1598755297-5299

Details of the mutation T860T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3860T860TacTacC194319All0.000037
ORF1ab/nsp3860T860TacTacA74319All0.000014
ORF1ab/nsp3860T860TacTacG51319All0.00001
ORF1ab/nsp3860T860TacTacC3148B.1.1.70.000028
ORF1ab/nsp3860T860TacTacA1748B.1.1.70.000015
ORF1ab/nsp3860T860TacTacC4144AY.40.000064
ORF1ab/nsp3860T860TacTacA244AY.40.000003
ORF1ab/nsp3860T860TacTacG144AY.40.000002
ORF1ab/nsp3860T860TacTacG2525B.1.1941
ORF1ab/nsp3860T860TacTacC1616AY.250.000096
ORF1ab/nsp3860T860TacTacA1415B.1.10.000254
ORF1ab/nsp3860T860TacTacG115B.1.10.000018
ORF1ab/nsp3860T860TacTacC914AY.430.00004
ORF1ab/nsp3860T860TacTacG514AY.430.000022
ORF1ab/nsp3860T860TacTacC1313AY.470.000404
ORF1ab/nsp3860T860TacTacC810B.1.617.20.00003
ORF1ab/nsp3860T860TacTacA210B.1.617.20.000008
ORF1ab/nsp3860T860TacTacC89AY.390.000198
ORF1ab/nsp3860T860TacTacA19AY.390.000025
ORF1ab/nsp3860T860TacTacG99AY.39.10.000357
ORF1ab/nsp3860T860TacTacC99AY.440.000055
ORF1ab/nsp3860T860TacTacA77B.1.5950.001827
ORF1ab/nsp3860T860TacTacA77B.1.6230.003755
ORF1ab/nsp3860T860TacTacA67P.10.000095
ORF1ab/nsp3860T860TacTacC17P.10.000016
ORF1ab/nsp3860T860TacTacC66AY.260.00017
ORF1ab/nsp3860T860TacTacC66AY.460.000624
ORF1ab/nsp3860T860TacTacC66AY.740.000694
ORF1ab/nsp3860T860TacTacG46B.10.000037
ORF1ab/nsp3860T860TacTacA26B.10.000018
ORF1ab/nsp3860T860TacTacC45B.1.4290.000094
ORF1ab/nsp3860T860TacTacA15B.1.4290.000024
ORF1ab/nsp3860T860TacTacA34B.1.1770.00004
ORF1ab/nsp3860T860TacTacC14B.1.1770.000013
ORF1ab/nsp3860T860TacTacC33AY.300.001187
ORF1ab/nsp3860T860TacTacA33B.1.6200.002838
ORF1ab/nsp3860T860TacTacC22AY.1020.000053
ORF1ab/nsp3860T860TacTacC22AY.290.000032
ORF1ab/nsp3860T860TacTacC22AY.730.001331
ORF1ab/nsp3860T860TacTacC22B.1.177.120.000303
ORF1ab/nsp3860T860TacTacG12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacC12B.1.177.730.000566
ORF1ab/nsp3860T860TacTacG12B.1.20.000009
ORF1ab/nsp3860T860TacTacC12B.1.20.000009
ORF1ab/nsp3860T860TacTacA12B.1.3510.00003
ORF1ab/nsp3860T860TacTacC12B.1.3510.00003
ORF1ab/nsp3860T860TacTacC11AY.1030.000006
ORF1ab/nsp3860T860TacTacC11AY.1050.000643
ORF1ab/nsp3860T860TacTacC11AY.1110.000183
ORF1ab/nsp3860T860TacTacC11AY.1190.000035
ORF1ab/nsp3860T860TacTacC11AY.1210.000135
ORF1ab/nsp3860T860TacTacC11AY.200.000039
ORF1ab/nsp3860T860TacTacC11AY.4.2.10.000149
ORF1ab/nsp3860T860TacTacA11AY.420.00004
ORF1ab/nsp3860T860TacTacC11AY.5.40.000277
ORF1ab/nsp3860T860TacTacA11AY.520.000814
ORF1ab/nsp3860T860TacTacA11AY.750.000056
ORF1ab/nsp3860T860TacTacA11AY.80.000606
ORF1ab/nsp3860T860TacTacC11AY.9.20.000037
ORF1ab/nsp3860T860TacTacC11AY.980.000079
ORF1ab/nsp3860T860TacTacA11B.1.1.1760.000439
ORF1ab/nsp3860T860TacTacC11B.1.1.2140.000055
ORF1ab/nsp3860T860TacTacG11B.1.177.210.000076
ORF1ab/nsp3860T860TacTacA11B.1.177.510.004566
ORF1ab/nsp3860T860TacTacC11B.1.177.600.000218
ORF1ab/nsp3860T860TacTacC11B.1.2210.000071
ORF1ab/nsp3860T860TacTacC11B.1.2430.00007
ORF1ab/nsp3860T860TacTacC11B.1.4090.000781
ORF1ab/nsp3860T860TacTacC11B.1.466.20.000391
ORF1ab/nsp3860T860TacTacG11B.1.5250.000113
ORF1ab/nsp3860T860TacTacA11B.1.5380.008065
ORF1ab/nsp3860T860TacTacG11B.1.5800.004065
ORF1ab/nsp3860T860TacTacC11B.1.5960.000087
ORF1ab/nsp3860T860TacTacC11B.1.6000.005848
ORF1ab/nsp3860T860TacTacA11B.30.000831
ORF1ab/nsp3860T860TacTacC11P.1.140.000048
ORF1ab/nsp3860T860TacTacC11P.1.70.000319
ORF1ab/nsp3860T860TacTacG11Q.80.000165
ORF1ab/nsp3860T860TacTacC11R.10.00009