CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 763 | T763M | T1581M | nonsyn | aCg | aTg | 1587 | 1587 | 1 | 5006-5008 |
Details of the mutation T763M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1587 | 1587 | All | 0.000304 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 665 | 665 | B.1.1.433 | 0.947293 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 202 | 202 | AY.42 | 0.008126 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 181 | 181 | B.1.1.7 | 0.000162 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 110 | 110 | AY.4 | 0.000171 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 34 | 34 | B.1.596 | 0.002963 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 24 | 24 | B.1.2 | 0.000211 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | B.1.1.28 | 0.003424 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B | 0.001278 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.1.328 | 0.067797 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 4 | 4 | B.1.480 | 0.00995 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 763 | T763M | aCg | aTg | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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