CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T725A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3725T725AT1543AnonsynAcaGca2792760.9892474892-4894
ORF1ab/nsp3725T725AT1543AnonsynAcAGcT27920.007168464892-4894
ORF1ab/nsp3725T725AT1543AnonsynAcAGcG27910.003584234892-4894

Details of the mutation T725A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3725T725AAcaGca276279All0.000053
ORF1ab/nsp3725T725AAcAGcT2279All0
ORF1ab/nsp3725T725AAcAGcG1279All0
ORF1ab/nsp3725T725AAcaGca116116AY.940.05135
ORF1ab/nsp3725T725AAcaGca3030AY.90.002028
ORF1ab/nsp3725T725AAcaGca2727B.1.1.70.000024
ORF1ab/nsp3725T725AAcaGca1212AY.39.10.000475
ORF1ab/nsp3725T725AAcaGca1112B.1.10.0002
ORF1ab/nsp3725T725AAcAGcG112B.1.10.000018
ORF1ab/nsp3725T725AAcaGca1111B.10.000101
ORF1ab/nsp3725T725AAcaGca99B.1.1600.000281
ORF1ab/nsp3725T725AAcaGca77B.1.617.20.000026
ORF1ab/nsp3725T725AAcaGca66B.1.20.000053
ORF1ab/nsp3725T725AAcaGca55AY.40.000008
ORF1ab/nsp3725T725AAcaGca44B.1.1.10.001307
ORF1ab/nsp3725T725AAcaGca44B.1.1.2880.007663
ORF1ab/nsp3725T725AAcaGca33AY.430.000013
ORF1ab/nsp3725T725AAcaGca33AY.510.002727
ORF1ab/nsp3725T725AAcAGcT220.111111
ORF1ab/nsp3725T725AAcaGca22A.30.004193
ORF1ab/nsp3725T725AAcaGca22AY.1190.000071
ORF1ab/nsp3725T725AAcaGca22AY.440.000012
ORF1ab/nsp3725T725AAcaGca22B.1.4290.000047
ORF1ab/nsp3725T725AAcaGca22B.400.000729
ORF1ab/nsp3725T725AAcaGca22B.6.60.001778
ORF1ab/nsp3725T725AAcaGca11A.20.000662
ORF1ab/nsp3725T725AAcaGca11AY.230.00007
ORF1ab/nsp3725T725AAcaGca11AY.250.000006
ORF1ab/nsp3725T725AAcaGca11AY.290.000016
ORF1ab/nsp3725T725AAcaGca11AY.390.000025
ORF1ab/nsp3725T725AAcaGca11AY.4.20.000022
ORF1ab/nsp3725T725AAcaGca11AY.450.000122
ORF1ab/nsp3725T725AAcaGca11AY.910.00073
ORF1ab/nsp3725T725AAcaGca11B.1.1.3720.000689
ORF1ab/nsp3725T725AAcaGca11B.1.1.3890.006061
ORF1ab/nsp3725T725AAcaGca11B.1.5330.009615
ORF1ab/nsp3725T725AAcaGca11B.1.5960.000087
ORF1ab/nsp3725T725AAcaGca11B.1.619.10.000641
ORF1ab/nsp3725T725AAcaGca11B.1.9.50.005682
ORF1ab/nsp3725T725AAcaGca11B.110.005128
ORF1ab/nsp3725T725AAcaGca11P.10.000016