CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T64T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp364T64TT882TsynacTacG27458272690.9931172909-2911
ORF1ab/nsp364T64TT882TsynacTacC274581480.005390052909-2911
ORF1ab/nsp364T64TT882TsynacTacA27458410.001493192909-2911

Details of the mutation T64T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp364T64TacTacG2726927458All0.005216
ORF1ab/nsp364T64TacTacC14827458All0.000028
ORF1ab/nsp364T64TacTacA4127458All0.000008
ORF1ab/nsp364T64TacTacG2675126769AY.260.757325
ORF1ab/nsp364T64TacTacA1626769AY.260.000453
ORF1ab/nsp364T64TacTacC226769AY.260.000057
ORF1ab/nsp364T64TacTacG7176B.1.617.20.000267
ORF1ab/nsp364T64TacTacC476B.1.617.20.000015
ORF1ab/nsp364T64TacTacA176B.1.617.20.000004
ORF1ab/nsp364T64TacTacG5353AY.75.10.009556
ORF1ab/nsp364T64TacTacG4747AY.1130.006692
ORF1ab/nsp364T64TacTacG4545AY.750.002521
ORF1ab/nsp364T64TacTacC2638B.1.1.70.000023
ORF1ab/nsp364T64TacTacG838B.1.1.70.000007
ORF1ab/nsp364T64TacTacA438B.1.1.70.000004
ORF1ab/nsp364T64TacTacC2037AY.40.000031
ORF1ab/nsp364T64TacTacG1637AY.40.000025
ORF1ab/nsp364T64TacTacA137AY.40.000002
ORF1ab/nsp364T64TacTacG3232AY.120.20.041131
ORF1ab/nsp364T64TacTacG1321B.10.000119
ORF1ab/nsp364T64TacTacC521B.10.000046
ORF1ab/nsp364T64TacTacA321B.10.000027
ORF1ab/nsp364T64TacTacG1919AY.710.009026
ORF1ab/nsp364T64TacTacC1119B.1.1770.000145
ORF1ab/nsp364T64TacTacG819B.1.1770.000105
ORF1ab/nsp364T64TacTacG1418AY.430.000062
ORF1ab/nsp364T64TacTacA418AY.430.000018
ORF1ab/nsp364T64TacTacG1518AY.440.000091
ORF1ab/nsp364T64TacTacC318AY.440.000018
ORF1ab/nsp364T64TacTacG1717AY.620.007407
ORF1ab/nsp364T64TacTacG1416AY.30.000139
ORF1ab/nsp364T64TacTacC216AY.30.00002
ORF1ab/nsp364T64TacTacG1013AY.390.000247
ORF1ab/nsp364T64TacTacC313AY.390.000074
ORF1ab/nsp364T64TacTacG1313AY.470.000404
ORF1ab/nsp364T64TacTacC1313B.1.258.170.001352
ORF1ab/nsp364T64TacTacG88AY.1170.000676
ORF1ab/nsp364T64TacTacG48AY.250.000024
ORF1ab/nsp364T64TacTacC48AY.250.000024
ORF1ab/nsp364T64TacTacC58B.1.10.000091
ORF1ab/nsp364T64TacTacG28B.1.10.000036
ORF1ab/nsp364T64TacTacA18B.1.10.000018
ORF1ab/nsp364T64TacTacC58B.1.20.000044
ORF1ab/nsp364T64TacTacG28B.1.20.000018
ORF1ab/nsp364T64TacTacA18B.1.20.000009
ORF1ab/nsp364T64TacTacG67AY.1030.000037
ORF1ab/nsp364T64TacTacC17AY.1030.000006
ORF1ab/nsp364T64TacTacG77AY.930.001912
ORF1ab/nsp364T64TacTacC77B.1.1.280.002179
ORF1ab/nsp364T64TacTacG77B.1.177.540.004245
ORF1ab/nsp364T64TacTacA77B.1.2340.000924
ORF1ab/nsp364T64TacTacG66AY.520.004886
ORF1ab/nsp364T64TacTacG66AY.540.000572
ORF1ab/nsp364T64TacTacC66B.1.5250.000679
ORF1ab/nsp364T64TacTacC35AY.1020.00008
ORF1ab/nsp364T64TacTacG25AY.1020.000053
ORF1ab/nsp364T64TacTacG55AY.920.001436
ORF1ab/nsp364T64TacTacG44AY.46.20.002541
ORF1ab/nsp364T64TacTacG44AY.610.000419
ORF1ab/nsp364T64TacTacC24AY.9.20.000073
ORF1ab/nsp364T64TacTacG24AY.9.20.000073
ORF1ab/nsp364T64TacTacC44AY.98.10.000194
ORF1ab/nsp364T64TacTacG44B0.000511
ORF1ab/nsp364T64TacTacG33AY.100.00159
ORF1ab/nsp364T64TacTacG23AY.1200.000074
ORF1ab/nsp364T64TacTacC13AY.1200.000037
ORF1ab/nsp364T64TacTacG33AY.130.000483
ORF1ab/nsp364T64TacTacG23AY.39.10.000079
ORF1ab/nsp364T64TacTacC13AY.39.10.00004
ORF1ab/nsp364T64TacTacG33AY.450.000365
ORF1ab/nsp364T64TacTacG33AY.980.000237
ORF1ab/nsp364T64TacTacG13P.10.000016
ORF1ab/nsp364T64TacTacC13P.10.000016
ORF1ab/nsp364T64TacTacA13P.10.000016
ORF1ab/nsp364T64TacTacC22A.2.50.000998
ORF1ab/nsp364T64TacTacG22AY.1000.000092
ORF1ab/nsp364T64TacTacG22AY.1190.000071
ORF1ab/nsp364T64TacTacC22AY.120.10.000642
ORF1ab/nsp364T64TacTacA12AY.300.000396
ORF1ab/nsp364T64TacTacG12AY.300.000396
ORF1ab/nsp364T64TacTacC12AY.460.000104
ORF1ab/nsp364T64TacTacG12AY.460.000104
ORF1ab/nsp364T64TacTacG12AY.46.60.000072
ORF1ab/nsp364T64TacTacC12AY.46.60.000072
ORF1ab/nsp364T64TacTacG22AY.670.000929
ORF1ab/nsp364T64TacTacG22AY.700.000417
ORF1ab/nsp364T64TacTacG22B.1.2210.000142
ORF1ab/nsp364T64TacTacC11AY.10.000396
ORF1ab/nsp364T64TacTacG11AY.1080.001103
ORF1ab/nsp364T64TacTacG11AY.1100.000113
ORF1ab/nsp364T64TacTacG11AY.116.10.000311
ORF1ab/nsp364T64TacTacG11AY.1180.000063
ORF1ab/nsp364T64TacTacG11AY.200.000039
ORF1ab/nsp364T64TacTacG11AY.230.00007
ORF1ab/nsp364T64TacTacG11AY.23.10.000417
ORF1ab/nsp364T64TacTacC11AY.3.10.000085
ORF1ab/nsp364T64TacTacG11AY.330.000067
ORF1ab/nsp364T64TacTacC11AY.4.20.000022
ORF1ab/nsp364T64TacTacG11AY.400.000964
ORF1ab/nsp364T64TacTacG11AY.420.00004
ORF1ab/nsp364T64TacTacC11AY.50.000021
ORF1ab/nsp364T64TacTacG11AY.640.000595
ORF1ab/nsp364T64TacTacG11AY.7.10.000113
ORF1ab/nsp364T64TacTacG11AY.730.000665
ORF1ab/nsp364T64TacTacG11AY.90.000068
ORF1ab/nsp364T64TacTacG11AY.9.10.000084
ORF1ab/nsp364T64TacTacG11AY.99.20.000092
ORF1ab/nsp364T64TacTacC11B.1.1.3060.000438
ORF1ab/nsp364T64TacTacG11B.1.1.3480.000796
ORF1ab/nsp364T64TacTacC11B.1.1390.000733
ORF1ab/nsp364T64TacTacC11B.1.1600.000031
ORF1ab/nsp364T64TacTacC11B.1.160.130.027778
ORF1ab/nsp364T64TacTacC11B.1.177.570.000281
ORF1ab/nsp364T64TacTacC11B.1.2400.000216
ORF1ab/nsp364T64TacTacC11B.1.3200.001245
ORF1ab/nsp364T64TacTacG11B.1.3510.00003
ORF1ab/nsp364T64TacTacG11B.1.360.000146
ORF1ab/nsp364T64TacTacA11B.1.5960.000087
ORF1ab/nsp364T64TacTacC11B.1.617.10.000129
ORF1ab/nsp364T64TacTacG11B.1.6210.000089
ORF1ab/nsp364T64TacTacG11B.310.003731
ORF1ab/nsp364T64TacTacG11C.36.30.000567
ORF1ab/nsp364T64TacTacG11P.1.170.000162
ORF1ab/nsp364T64TacTacG11P.1.70.000319
ORF1ab/nsp364T64TacTacC11Q.80.000165