CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 526 | T526I | T1344I | nonsyn | aCa | aTa | 2565 | 2565 | 1 | 4295-4297 |
Details of the mutation T526I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2565 | 2565 | All | 0.000491 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1191 | 1191 | B.1.1.7 | 0.001066 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 443 | 443 | B.1.617.2 | 0.001668 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 334 | 334 | AY.4.2 | 0.007244 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 79 | 79 | AY.98 | 0.006241 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 78 | 78 | AY.3 | 0.000776 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 56 | 56 | AY.113 | 0.007974 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 54 | 54 | AY.4 | 0.000084 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 28 | 28 | B.1.1 | 0.000508 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 26 | 26 | AY.98.1 | 0.001259 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 526 | T526I | aCa | aTa | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|