CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T428T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3428T428TT1246TsynacTacC1741650.9482764001-4003
ORF1ab/nsp3428T428TT1246TsynacTacA17470.04022994001-4003
ORF1ab/nsp3428T428TT1246TsynacTacG17420.01149434001-4003

Details of the mutation T428T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3428T428TacTacC165174All0.000032
ORF1ab/nsp3428T428TacTacA7174All0.000001
ORF1ab/nsp3428T428TacTacG2174All0
ORF1ab/nsp3428T428TacTacC3234B.1.1.70.000029
ORF1ab/nsp3428T428TacTacA134B.1.1.70.000001
ORF1ab/nsp3428T428TacTacG134B.1.1.70.000001
ORF1ab/nsp3428T428TacTacC3232AY.1030.000199
ORF1ab/nsp3428T428TacTacC1313B.1.360.001897
ORF1ab/nsp3428T428TacTacC1011B.10.000092
ORF1ab/nsp3428T428TacTacA111B.10.000009
ORF1ab/nsp3428T428TacTacC88B.1.1.2840.000859
ORF1ab/nsp3428T428TacTacC460.222222
ORF1ab/nsp3428T428TacTacA260.111111
ORF1ab/nsp3428T428TacTacC55AY.250.00003
ORF1ab/nsp3428T428TacTacC45B.1.617.20.000015
ORF1ab/nsp3428T428TacTacA15B.1.617.20.000004
ORF1ab/nsp3428T428TacTacC44B.1.2580.000266
ORF1ab/nsp3428T428TacTacC33AY.1140.000693
ORF1ab/nsp3428T428TacTacC33AY.200.000117
ORF1ab/nsp3428T428TacTacC23AY.40.000003
ORF1ab/nsp3428T428TacTacG13AY.40.000002
ORF1ab/nsp3428T428TacTacC33AY.98.10.000145
ORF1ab/nsp3428T428TacTacC33B.1.1110.003525
ORF1ab/nsp3428T428TacTacC33B.1.20.000026
ORF1ab/nsp3428T428TacTacC22AY.290.000032
ORF1ab/nsp3428T428TacTacC22AY.30.00002
ORF1ab/nsp3428T428TacTacC22AY.430.000009
ORF1ab/nsp3428T428TacTacC22AY.540.000191
ORF1ab/nsp3428T428TacTacC22B.1.3960.001411
ORF1ab/nsp3428T428TacTacC22B.1.4270.000101
ORF1ab/nsp3428T428TacTacC22B.1.617.10.000258
ORF1ab/nsp3428T428TacTacC22B.1.6280.000705
ORF1ab/nsp3428T428TacTacC22D.20.00015
ORF1ab/nsp3428T428TacTacC22P.10.000032
ORF1ab/nsp3428T428TacTacC11A.23.10.000704
ORF1ab/nsp3428T428TacTacC11AY.1020.000027
ORF1ab/nsp3428T428TacTacC11AY.1130.000142
ORF1ab/nsp3428T428TacTacC11AY.29.10.000221
ORF1ab/nsp3428T428TacTacC11AY.440.000006
ORF1ab/nsp3428T428TacTacC11AY.460.000104
ORF1ab/nsp3428T428TacTacA11AY.690.000187
ORF1ab/nsp3428T428TacTacC11AY.7.20.000559
ORF1ab/nsp3428T428TacTacC11AY.75.10.00018
ORF1ab/nsp3428T428TacTacC11AY.9.10.000084
ORF1ab/nsp3428T428TacTacC11B.1.10.000018
ORF1ab/nsp3428T428TacTacC11B.1.1.2910.000742
ORF1ab/nsp3428T428TacTacC11B.1.1.3180.000302
ORF1ab/nsp3428T428TacTacA11B.1.1.330.000421
ORF1ab/nsp3428T428TacTacC11B.1.1.5280.004808
ORF1ab/nsp3428T428TacTacC11B.1.2210.000071
ORF1ab/nsp3428T428TacTacC11P.1.10.000318
ORF1ab/nsp3428T428TacTacC11P.1.150.000232