CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T217T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3217T217TT1035TsynacTacC2901420.4896553368-3370
ORF1ab/nsp3217T217TT1035TsynacTacG2901270.4379313368-3370
ORF1ab/nsp3217T217TT1035TsynacTacA290210.07241383368-3370

Details of the mutation T217T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3217T217TacTacC142290All0.000027
ORF1ab/nsp3217T217TacTacG127290All0.000024
ORF1ab/nsp3217T217TacTacA21290All0.000004
ORF1ab/nsp3217T217TacTacC4351B.1.617.20.000162
ORF1ab/nsp3217T217TacTacG851B.1.617.20.00003
ORF1ab/nsp3217T217TacTacG2434B.1.1.70.000021
ORF1ab/nsp3217T217TacTacC834B.1.1.70.000007
ORF1ab/nsp3217T217TacTacA234B.1.1.70.000002
ORF1ab/nsp3217T217TacTacG1919AY.1190.000671
ORF1ab/nsp3217T217TacTacC1818AY.1020.000477
ORF1ab/nsp3217T217TacTacC814AY.430.000035
ORF1ab/nsp3217T217TacTacG614AY.430.000027
ORF1ab/nsp3217T217TacTacG1313AY.39.10.000515
ORF1ab/nsp3217T217TacTacC911AY.390.000222
ORF1ab/nsp3217T217TacTacG211AY.390.000049
ORF1ab/nsp3217T217TacTacC1010AY.870.008326
ORF1ab/nsp3217T217TacTacA610B.1.2340.000792
ORF1ab/nsp3217T217TacTacC310B.1.2340.000396
ORF1ab/nsp3217T217TacTacG110B.1.2340.000132
ORF1ab/nsp3217T217TacTacG99B.1.4290.000212
ORF1ab/nsp3217T217TacTacC77B.1.6370.000512
ORF1ab/nsp3217T217TacTacG66AY.1090.004438
ORF1ab/nsp3217T217TacTacG46AY.250.000024
ORF1ab/nsp3217T217TacTacC26AY.250.000012
ORF1ab/nsp3217T217TacTacC45AY.1030.000025
ORF1ab/nsp3217T217TacTacA15AY.1030.000006
ORF1ab/nsp3217T217TacTacC44AY.130.000644
ORF1ab/nsp3217T217TacTacC44AY.290.000063
ORF1ab/nsp3217T217TacTacG44AY.4.40.001637
ORF1ab/nsp3217T217TacTacG44B.1.1.2840.00043
ORF1ab/nsp3217T217TacTacG34B.1.20.000026
ORF1ab/nsp3217T217TacTacC14B.1.20.000009
ORF1ab/nsp3217T217TacTacG44B.3.10.006633
ORF1ab/nsp3217T217TacTacC33AY.1000.000138
ORF1ab/nsp3217T217TacTacA13AY.40.000002
ORF1ab/nsp3217T217TacTacG13AY.40.000002
ORF1ab/nsp3217T217TacTacC13AY.40.000002
ORF1ab/nsp3217T217TacTacA33Q.10.000379
ORF1ab/nsp3217T217TacTacC22A.2.5.30.020619
ORF1ab/nsp3217T217TacTacC12AY.230.00007
ORF1ab/nsp3217T217TacTacA12AY.230.00007
ORF1ab/nsp3217T217TacTacG22AY.270.000129
ORF1ab/nsp3217T217TacTacA22AY.470.000062
ORF1ab/nsp3217T217TacTacG22B.1.177.810.000379
ORF1ab/nsp3217T217TacTacC110.055556
ORF1ab/nsp3217T217TacTacG11AY.10.000396
ORF1ab/nsp3217T217TacTacG11AY.1060.000335
ORF1ab/nsp3217T217TacTacG11AY.1160.000287
ORF1ab/nsp3217T217TacTacG11AY.1200.000037
ORF1ab/nsp3217T217TacTacC11AY.240.000431
ORF1ab/nsp3217T217TacTacG11AY.3.10.000085
ORF1ab/nsp3217T217TacTacC11AY.360.000148
ORF1ab/nsp3217T217TacTacG11AY.4.20.000022
ORF1ab/nsp3217T217TacTacG11AY.440.000006
ORF1ab/nsp3217T217TacTacC11AY.50.000021
ORF1ab/nsp3217T217TacTacC11AY.530.000288
ORF1ab/nsp3217T217TacTacA11AY.750.000056
ORF1ab/nsp3217T217TacTacC11AY.75.10.00018
ORF1ab/nsp3217T217TacTacC11AY.790.001211
ORF1ab/nsp3217T217TacTacG11B.10.000009
ORF1ab/nsp3217T217TacTacA11B.1.10.000018
ORF1ab/nsp3217T217TacTacG11B.1.1.10.000327
ORF1ab/nsp3217T217TacTacG11B.1.1.1920.002309
ORF1ab/nsp3217T217TacTacG11B.1.1.5190.00004
ORF1ab/nsp3217T217TacTacC11B.1.1.700.000341
ORF1ab/nsp3217T217TacTacG11B.1.110.30.000718
ORF1ab/nsp3217T217TacTacC11B.1.1600.000031
ORF1ab/nsp3217T217TacTacA11B.1.2580.000067
ORF1ab/nsp3217T217TacTacG11B.1.3110.000275
ORF1ab/nsp3217T217TacTacG11B.1.3320.003497
ORF1ab/nsp3217T217TacTacC11B.1.3960.000706
ORF1ab/nsp3217T217TacTacC11B.1.4270.00005
ORF1ab/nsp3217T217TacTacC11B.1.5440.006024
ORF1ab/nsp3217T217TacTacA11B.1.6250.002353
ORF1ab/nsp3217T217TacTacA11B.310.003731
ORF1ab/nsp3217T217TacTacG11C.160.00106
ORF1ab/nsp3217T217TacTacC11P.10.000016
ORF1ab/nsp3217T217TacTacC11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.