CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T217I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3217T217IT1035InonsynaCtaTt190819070.9994763368-3370
ORF1ab/nsp3217T217IT1035InonsynaCTaTC190810.0005241093368-3370

Details of the mutation T217I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3217T217IaCtaTt19071908All0.000365
ORF1ab/nsp3217T217IaCTaTC11908All0
ORF1ab/nsp3217T217IaCtaTt568568B.1.1.70.000508
ORF1ab/nsp3217T217IaCtaTt155155AY.40.000241
ORF1ab/nsp3217T217IaCtaTt121121B.1.20.001065
ORF1ab/nsp3217T217IaCtaTt9999C.370.01149
ORF1ab/nsp3217T217IaCtaTt9797AY.30.000965
ORF1ab/nsp3217T217IaCtaTt7373AY.1030.000453
ORF1ab/nsp3217T217IaCtaTt6262B.1.160.160.057621
ORF1ab/nsp3217T217IaCtaTt5454AY.440.000329
ORF1ab/nsp3217T217IaCtaTt4343AY.390.001063
ORF1ab/nsp3217T217IaCtaTt3636B.10.00033
ORF1ab/nsp3217T217IaCtaTt3535B.1.1.930.897436
ORF1ab/nsp3217T217IaCtaTt3131AY.430.000137
ORF1ab/nsp3217T217IaCtaTt2626B.1.10.000472
ORF1ab/nsp3217T217IaCtaTt2525B.1.617.20.000094
ORF1ab/nsp3217T217IaCtaTt2323B.1.4290.000541
ORF1ab/nsp3217T217IaCtaTt2222AY.250.000132
ORF1ab/nsp3217T217IaCtaTt2222B.1.1.3050.084942
ORF1ab/nsp3217T217IaCtaTt2222B.1.3510.000654
ORF1ab/nsp3217T217IaCtaTt2222P.10.000347
ORF1ab/nsp3217T217IaCtaTt1717AY.260.000481
ORF1ab/nsp3217T217IaCtaTt1414B.1.5260.000329
ORF1ab/nsp3217T217IaCtaTt1212AY.1020.000318
ORF1ab/nsp3217T217IaCtaTt1212B.1.1770.000158
ORF1ab/nsp3217T217IaCtaTt1212B.1.360.001751
ORF1ab/nsp3217T217IaCtaTt1111B.1.1.1890.016641
ORF1ab/nsp3217T217IaCtaTt1111B.1.36.290.005691
ORF1ab/nsp3217T217IaCtaTt1010B.1.1.5190.000397
ORF1ab/nsp3217T217IaCtaTt1010B.1.3690.002852
ORF1ab/nsp3217T217IaCtaTt99AY.120.002845
ORF1ab/nsp3217T217IaCtaTt77AY.460.000729
ORF1ab/nsp3217T217IaCtaTt77B.1.1600.000218
ORF1ab/nsp3217T217IaCtaTt77B.1.160.280.020468
ORF1ab/nsp3217T217IaCtaTt77B.1.2340.000924
ORF1ab/nsp3217T217IaCtaTt77B.1.2430.000487
ORF1ab/nsp3217T217IaCtaTt66AY.50.000124
ORF1ab/nsp3217T217IaCtaTt66AY.60.000247
ORF1ab/nsp3217T217IaCtaTt66AY.98.10.000291
ORF1ab/nsp3217T217IaCtaTt66B.1.1.2220.001224
ORF1ab/nsp3217T217IaCtaTt55B.1.2400.001078
ORF1ab/nsp3217T217IaCtaTt44A.2.50.001996
ORF1ab/nsp3217T217IaCtaTt44AY.1110.000733
ORF1ab/nsp3217T217IaCtaTt44AY.1190.000141
ORF1ab/nsp3217T217IaCtaTt44AY.290.000063
ORF1ab/nsp3217T217IaCtaTt44AY.90.00027
ORF1ab/nsp3217T217IaCtaTt44B.1.2580.000266
ORF1ab/nsp3217T217IaCtaTt33AY.1170.000254
ORF1ab/nsp3217T217IaCtaTt33AY.200.000117
ORF1ab/nsp3217T217IaCtaTt33AY.270.000194
ORF1ab/nsp3217T217IaCtaTt33AY.330.0002
ORF1ab/nsp3217T217IaCtaTt33AY.360.000445
ORF1ab/nsp3217T217IaCtaTt33AY.420.000121
ORF1ab/nsp3217T217IaCtaTt33AY.470.000093
ORF1ab/nsp3217T217IaCtaTt33AY.990.003148
ORF1ab/nsp3217T217IaCtaTt33B.1.1.1440.085714
ORF1ab/nsp3217T217IaCtaTt33B.1.1.280.000934
ORF1ab/nsp3217T217IaCtaTt33B.1.1.5260.010638
ORF1ab/nsp3217T217IaCtaTt33B.1.1100.013575
ORF1ab/nsp3217T217IaCtaTt33B.1.177.40.000633
ORF1ab/nsp3217T217IaCtaTt33B.1.5170.001281
ORF1ab/nsp3217T217IaCtaTt33B.1.5960.000261
ORF1ab/nsp3217T217IaCtaTt33L.30.010638
ORF1ab/nsp3217T217IaCtaTt33P.30.004785
ORF1ab/nsp3217T217IaCtaTt33Q.80.000495
ORF1ab/nsp3217T217IaCtaTt120.055556
ORF1ab/nsp3217T217IaCTaTC120.055556
ORF1ab/nsp3217T217IaCtaTt22AY.1000.000092
ORF1ab/nsp3217T217IaCtaTt22AY.1040.003968
ORF1ab/nsp3217T217IaCtaTt22AY.1200.000074
ORF1ab/nsp3217T217IaCtaTt22AY.140.000176
ORF1ab/nsp3217T217IaCtaTt22AY.300.000791
ORF1ab/nsp3217T217IaCtaTt22AY.340.000194
ORF1ab/nsp3217T217IaCtaTt22AY.4.20.000043
ORF1ab/nsp3217T217IaCtaTt22AY.980.000158
ORF1ab/nsp3217T217IaCtaTt22B0.000256
ORF1ab/nsp3217T217IaCtaTt22B.1.1.1740.006757
ORF1ab/nsp3217T217IaCtaTt22B.1.1.2160.001781
ORF1ab/nsp3217T217IaCtaTt22B.1.1.4060.012987
ORF1ab/nsp3217T217IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp3217T217IaCtaTt22B.1.177.210.000153
ORF1ab/nsp3217T217IaCtaTt22B.1.177.70.00033
ORF1ab/nsp3217T217IaCtaTt22B.1.214.20.001199
ORF1ab/nsp3217T217IaCtaTt22B.1.221.10.005814
ORF1ab/nsp3217T217IaCtaTt22B.1.2390.002442
ORF1ab/nsp3217T217IaCtaTt22B.1.351.20.000605
ORF1ab/nsp3217T217IaCtaTt22B.1.36.70.008
ORF1ab/nsp3217T217IaCtaTt22B.1.4270.000101
ORF1ab/nsp3217T217IaCtaTt22B.1.5820.000981
ORF1ab/nsp3217T217IaCtaTt22B.1.5880.00182
ORF1ab/nsp3217T217IaCtaTt22B.1.5950.000522
ORF1ab/nsp3217T217IaCtaTt22D.20.00015
ORF1ab/nsp3217T217IaCtaTt22P.20.000373
ORF1ab/nsp3217T217IaCtaTt11A.30.002096
ORF1ab/nsp3217T217IaCtaTt11AM.40.003571
ORF1ab/nsp3217T217IaCtaTt11AP.10.001502
ORF1ab/nsp3217T217IaCtaTt11AY.100.00053
ORF1ab/nsp3217T217IaCtaTt11AY.1010.00049
ORF1ab/nsp3217T217IaCtaTt11AY.1060.000335
ORF1ab/nsp3217T217IaCtaTt11AY.1090.00074
ORF1ab/nsp3217T217IaCtaTt11AY.1130.000142
ORF1ab/nsp3217T217IaCtaTt11AY.230.00007
ORF1ab/nsp3217T217IaCtaTt11AY.350.000233
ORF1ab/nsp3217T217IaCtaTt11AY.39.10.00004
ORF1ab/nsp3217T217IaCtaTt11AY.400.000964
ORF1ab/nsp3217T217IaCtaTt11AY.450.000122
ORF1ab/nsp3217T217IaCtaTt11AY.46.10.001027
ORF1ab/nsp3217T217IaCtaTt11AY.46.60.000072
ORF1ab/nsp3217T217IaCtaTt11AY.5.30.000337
ORF1ab/nsp3217T217IaCtaTt11AY.530.000288
ORF1ab/nsp3217T217IaCtaTt11AY.550.000917
ORF1ab/nsp3217T217IaCtaTt11AY.590.00053
ORF1ab/nsp3217T217IaCtaTt11AY.7.10.000113
ORF1ab/nsp3217T217IaCtaTt11AY.750.000056
ORF1ab/nsp3217T217IaCtaTt11AY.9.2.10.001976
ORF1ab/nsp3217T217IaCtaTt11AY.930.000273
ORF1ab/nsp3217T217IaCtaTt11AY.940.000443
ORF1ab/nsp3217T217IaCtaTt11B.1.1.10.000327
ORF1ab/nsp3217T217IaCtaTt11B.1.1.100.001115
ORF1ab/nsp3217T217IaCtaTt11B.1.1.1760.000439
ORF1ab/nsp3217T217IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp3217T217IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp3217T217IaCtaTt11B.1.1.2550.00303
ORF1ab/nsp3217T217IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp3217T217IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp3217T217IaCtaTt11B.1.1.330.000421
ORF1ab/nsp3217T217IaCtaTt11B.1.1.3490.010309
ORF1ab/nsp3217T217IaCtaTt11B.1.1.370.000193
ORF1ab/nsp3217T217IaCtaTt11B.1.1.500.000679
ORF1ab/nsp3217T217IaCtaTt11B.1.1570.002985
ORF1ab/nsp3217T217IaCtaTt11B.1.160.140.002119
ORF1ab/nsp3217T217IaCtaTt11B.1.160.300.002976
ORF1ab/nsp3217T217IaCtaTt11B.1.177.820.000477
ORF1ab/nsp3217T217IaCtaTt11B.1.2210.000071
ORF1ab/nsp3217T217IaCtaTt11B.1.2600.003344
ORF1ab/nsp3217T217IaCtaTt11B.1.3110.000275
ORF1ab/nsp3217T217IaCtaTt11B.1.3670.000792
ORF1ab/nsp3217T217IaCtaTt11B.1.3910.001127
ORF1ab/nsp3217T217IaCtaTt11B.1.4160.001269
ORF1ab/nsp3217T217IaCtaTt11B.1.4360.001029
ORF1ab/nsp3217T217IaCtaTt11B.1.5330.009615
ORF1ab/nsp3217T217IaCtaTt11B.1.5430.01
ORF1ab/nsp3217T217IaCtaTt11B.1.5600.00463
ORF1ab/nsp3217T217IaCtaTt11B.1.5750.000303
ORF1ab/nsp3217T217IaCtaTt11B.1.617.10.000129
ORF1ab/nsp3217T217IaCtaTt11B.1.6210.000089
ORF1ab/nsp3217T217IaCtaTt11B.1.6370.000073
ORF1ab/nsp3217T217IaCtaTt11L.10.001905
ORF1ab/nsp3217T217IaCtaTt11P.1.140.000048
ORF1ab/nsp3217T217IaCtaTt11P.1.150.000232
ORF1ab/nsp3217T217IaCtaTt11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.