CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1830T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31830T1830TT2648TsynacTacC2322170.9353458207-8209
ORF1ab/nsp31830T1830TT2648TsynacTacA232140.06034488207-8209
ORF1ab/nsp31830T1830TT2648TsynacTacG23210.004310348207-8209

Details of the mutation T1830T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31830T1830TacTacC217232All0.000042
ORF1ab/nsp31830T1830TacTacA14232All0.000003
ORF1ab/nsp31830T1830TacTacG1232All0
ORF1ab/nsp31830T1830TacTacC3131AY.440.000189
ORF1ab/nsp31830T1830TacTacC3030AY.290.000473
ORF1ab/nsp31830T1830TacTacC2829B.1.1.70.000025
ORF1ab/nsp31830T1830TacTacG129B.1.1.70.000001
ORF1ab/nsp31830T1830TacTacC2727B.1.1770.000356
ORF1ab/nsp31830T1830TacTacC2626B.1.617.20.000098
ORF1ab/nsp31830T1830TacTacC1111B.1.1600.000343
ORF1ab/nsp31830T1830TacTacC77AY.360.001037
ORF1ab/nsp31830T1830TacTacC77B.1.1.2840.000752
ORF1ab/nsp31830T1830TacTacC66AY.40.000009
ORF1ab/nsp31830T1830TacTacC55AY.1000.00023
ORF1ab/nsp31830T1830TacTacC44B.1.10.000073
ORF1ab/nsp31830T1830TacTacC44B.1.1.2140.000222
ORF1ab/nsp31830T1830TacTacC34B.1.20.000026
ORF1ab/nsp31830T1830TacTacA14B.1.20.000009
ORF1ab/nsp31830T1830TacTacA33AD.20.000657
ORF1ab/nsp31830T1830TacTacC23B.10.000018
ORF1ab/nsp31830T1830TacTacA13B.10.000009
ORF1ab/nsp31830T1830TacTacC33P.10.000047
ORF1ab/nsp31830T1830TacTacC22AY.420.00008
ORF1ab/nsp31830T1830TacTacC22AY.46.60.000144
ORF1ab/nsp31830T1830TacTacA22AY.470.000062
ORF1ab/nsp31830T1830TacTacC22B.1.1.2850.013072
ORF1ab/nsp31830T1830TacTacC22P.1.140.000096
ORF1ab/nsp31830T1830TacTacC22R.10.00018
ORF1ab/nsp31830T1830TacTacC11AY.1030.000006
ORF1ab/nsp31830T1830TacTacC11AY.1170.000085
ORF1ab/nsp31830T1830TacTacC11AY.1180.000063
ORF1ab/nsp31830T1830TacTacC11AY.30.00001
ORF1ab/nsp31830T1830TacTacC11AY.340.000097
ORF1ab/nsp31830T1830TacTacC11AY.430.000004
ORF1ab/nsp31830T1830TacTacC11AY.50.000021
ORF1ab/nsp31830T1830TacTacC11AY.530.000288
ORF1ab/nsp31830T1830TacTacC11AY.790.001211
ORF1ab/nsp31830T1830TacTacC11B.1.1.3060.000438
ORF1ab/nsp31830T1830TacTacC11B.1.1.5190.00004
ORF1ab/nsp31830T1830TacTacA11B.1.1460.004237
ORF1ab/nsp31830T1830TacTacA11B.1.177.530.002392
ORF1ab/nsp31830T1830TacTacA11B.1.177.730.000566
ORF1ab/nsp31830T1830TacTacC11B.1.177.860.000183
ORF1ab/nsp31830T1830TacTacA11B.1.2400.000216
ORF1ab/nsp31830T1830TacTacA11B.1.2580.000067
ORF1ab/nsp31830T1830TacTacC11B.1.438.10.000107
ORF1ab/nsp31830T1830TacTacA11B.1.5950.000261
ORF1ab/nsp31830T1830TacTacA11B.1.930.000934