CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1607T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31607T1607TT2425TsynacTacC13368133620.9995517538-7540
ORF1ab/nsp31607T1607TT2425TsynacTacA1336830.0002244177538-7540
ORF1ab/nsp31607T1607TT2425TsynacTacG1336830.0002244177538-7540

Details of the mutation T1607T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31607T1607TacTacC1336213368All0.002556
ORF1ab/nsp31607T1607TacTacA313368All0.000001
ORF1ab/nsp31607T1607TacTacG313368All0.000001
ORF1ab/nsp31607T1607TacTacC1316813168D.20.988143
ORF1ab/nsp31607T1607TacTacC5151B.10.000467
ORF1ab/nsp31607T1607TacTacC4141B.1.10.000744
ORF1ab/nsp31607T1607TacTacC2626B.1.1.250.014781
ORF1ab/nsp31607T1607TacTacC1010B.1.1.70.000009
ORF1ab/nsp31607T1607TacTacC88AY.40.000012
ORF1ab/nsp31607T1607TacTacC77AY.440.000043
ORF1ab/nsp31607T1607TacTacC66AY.260.00017
ORF1ab/nsp31607T1607TacTacC55B.1.177.70.000824
ORF1ab/nsp31607T1607TacTacC55B.1.20.000044
ORF1ab/nsp31607T1607TacTacC44B.1.1.1610.014134
ORF1ab/nsp31607T1607TacTacC33AY.1140.000693
ORF1ab/nsp31607T1607TacTacC33AY.430.000013
ORF1ab/nsp31607T1607TacTacG120.055556
ORF1ab/nsp31607T1607TacTacA120.055556
ORF1ab/nsp31607T1607TacTacC22AY.250.000012
ORF1ab/nsp31607T1607TacTacC22AY.30.00002
ORF1ab/nsp31607T1607TacTacC22AY.920.000575
ORF1ab/nsp31607T1607TacTacC11AS.10.009524
ORF1ab/nsp31607T1607TacTacC11AY.1000.000046
ORF1ab/nsp31607T1607TacTacC11AY.1030.000006
ORF1ab/nsp31607T1607TacTacC11AY.1190.000035
ORF1ab/nsp31607T1607TacTacC11AY.120.000316
ORF1ab/nsp31607T1607TacTacC11AY.390.000025
ORF1ab/nsp31607T1607TacTacC11AY.460.000104
ORF1ab/nsp31607T1607TacTacC11AY.470.000031
ORF1ab/nsp31607T1607TacTacC11AY.50.000021
ORF1ab/nsp31607T1607TacTacG11AY.670.000464
ORF1ab/nsp31607T1607TacTacC11AY.750.000056
ORF1ab/nsp31607T1607TacTacG11AY.90.000068
ORF1ab/nsp31607T1607TacTacC11AZ.20.000821
ORF1ab/nsp31607T1607TacTacC11B.1.1.2140.000055
ORF1ab/nsp31607T1607TacTacC11B.1.1770.000013
ORF1ab/nsp31607T1607TacTacA11B.1.177.810.000189
ORF1ab/nsp31607T1607TacTacC11B.1.2100.002132
ORF1ab/nsp31607T1607TacTacC11B.1.2580.000067
ORF1ab/nsp31607T1607TacTacC11B.1.5260.000024
ORF1ab/nsp31607T1607TacTacA11B.1.5610.000397
ORF1ab/nsp31607T1607TacTacC11B.1.5960.000087
ORF1ab/nsp31607T1607TacTacC11B.1.6280.000352
ORF1ab/nsp31607T1607TacTacC11P.20.000187