CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1492T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31492T1492TT2310TsynacCacT261425380.9709267193-7195
ORF1ab/nsp31492T1492TT2310TsynacCacG2614490.01874527193-7195
ORF1ab/nsp31492T1492TT2310TsynacCacA2614270.0103297193-7195

Details of the mutation T1492T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31492T1492TacCacT25382614All0.000485
ORF1ab/nsp31492T1492TacCacG492614All0.000009
ORF1ab/nsp31492T1492TacCacA272614All0.000005
ORF1ab/nsp31492T1492TacCacT834834B.1.177.620.994041
ORF1ab/nsp31492T1492TacCacT345346AY.430.001529
ORF1ab/nsp31492T1492TacCacA1346AY.430.000004
ORF1ab/nsp31492T1492TacCacT177179AY.40.000275
ORF1ab/nsp31492T1492TacCacA2179AY.40.000003
ORF1ab/nsp31492T1492TacCacT158158B.1.1600.004928
ORF1ab/nsp31492T1492TacCacT136141B.1.1.70.000122
ORF1ab/nsp31492T1492TacCacA4141B.1.1.70.000004
ORF1ab/nsp31492T1492TacCacG1141B.1.1.70.000001
ORF1ab/nsp31492T1492TacCacT99100AY.420.003983
ORF1ab/nsp31492T1492TacCacA1100AY.420.00004
ORF1ab/nsp31492T1492TacCacT9595AY.4.20.00206
ORF1ab/nsp31492T1492TacCacT9393AY.1030.000577
ORF1ab/nsp31492T1492TacCacT7070C.370.008124
ORF1ab/nsp31492T1492TacCacT5357AY.440.000323
ORF1ab/nsp31492T1492TacCacA457AY.440.000024
ORF1ab/nsp31492T1492TacCacT4344P.10.000677
ORF1ab/nsp31492T1492TacCacA144P.10.000016
ORF1ab/nsp31492T1492TacCacG4040AY.39.20.061633
ORF1ab/nsp31492T1492TacCacT3939AY.4.2.10.00581
ORF1ab/nsp31492T1492TacCacT3232AY.290.000505
ORF1ab/nsp31492T1492TacCacT3232B.1.20.000282
ORF1ab/nsp31492T1492TacCacT2929AY.260.000821
ORF1ab/nsp31492T1492TacCacT1623B.10.000147
ORF1ab/nsp31492T1492TacCacA423B.10.000037
ORF1ab/nsp31492T1492TacCacG323B.10.000027
ORF1ab/nsp31492T1492TacCacT2222AY.30.000219
ORF1ab/nsp31492T1492TacCacT2222B.1.10.000399
ORF1ab/nsp31492T1492TacCacT2122B.1.617.20.000079
ORF1ab/nsp31492T1492TacCacG122B.1.617.20.000004
ORF1ab/nsp31492T1492TacCacT2020P.1.140.000956
ORF1ab/nsp31492T1492TacCacT1313B.1.2340.001715
ORF1ab/nsp31492T1492TacCacT1111AY.1200.000409
ORF1ab/nsp31492T1492TacCacT1111AY.250.000066
ORF1ab/nsp31492T1492TacCacT910B.1.3510.000268
ORF1ab/nsp31492T1492TacCacA110B.1.3510.00003
ORF1ab/nsp31492T1492TacCacT99B.1.6210.000797
ORF1ab/nsp31492T1492TacCacT58AY.390.000124
ORF1ab/nsp31492T1492TacCacG38AY.390.000074
ORF1ab/nsp31492T1492TacCacT88B.1.1.250.004548
ORF1ab/nsp31492T1492TacCacT77AY.750.000392
ORF1ab/nsp31492T1492TacCacT77B.1.5750.002124
ORF1ab/nsp31492T1492TacCacT66B.1.4290.000141
ORF1ab/nsp31492T1492TacCacT55AY.1160.001434
ORF1ab/nsp31492T1492TacCacT55AY.200.000194
ORF1ab/nsp31492T1492TacCacT44AY.360.000593
ORF1ab/nsp31492T1492TacCacT44B.1.1.440.009639
ORF1ab/nsp31492T1492TacCacT24B.1.1.5190.000079
ORF1ab/nsp31492T1492TacCacA24B.1.1.5190.000079
ORF1ab/nsp31492T1492TacCacT34B.1.1770.00004
ORF1ab/nsp31492T1492TacCacG14B.1.1770.000013
ORF1ab/nsp31492T1492TacCacT44B.1.5260.000094
ORF1ab/nsp31492T1492TacCacT33AY.1000.000138
ORF1ab/nsp31492T1492TacCacT33AY.1020.00008
ORF1ab/nsp31492T1492TacCacT33B.1.5820.001472
ORF1ab/nsp31492T1492TacCacT22AY.230.000139
ORF1ab/nsp31492T1492TacCacA12AY.340.000097
ORF1ab/nsp31492T1492TacCacT12AY.340.000097
ORF1ab/nsp31492T1492TacCacT22AY.350.000466
ORF1ab/nsp31492T1492TacCacT22AY.450.000243
ORF1ab/nsp31492T1492TacCacT22AY.50.000041
ORF1ab/nsp31492T1492TacCacT22AY.60.000082
ORF1ab/nsp31492T1492TacCacT22AY.98.10.000097
ORF1ab/nsp31492T1492TacCacT22B0.000256
ORF1ab/nsp31492T1492TacCacT22B.1.1.2220.000408
ORF1ab/nsp31492T1492TacCacT22B.1.1.2790.002242
ORF1ab/nsp31492T1492TacCacT22B.1.1.2910.001485
ORF1ab/nsp31492T1492TacCacT22B.1.1.3060.000877
ORF1ab/nsp31492T1492TacCacT22B.1.1260.002551
ORF1ab/nsp31492T1492TacCacT22B.1.1280.001271
ORF1ab/nsp31492T1492TacCacT22B.1.2430.000139
ORF1ab/nsp31492T1492TacCacT22B.1.2920.117647
ORF1ab/nsp31492T1492TacCacT22B.1.3690.00057
ORF1ab/nsp31492T1492TacCacT12B.1.3910.001127
ORF1ab/nsp31492T1492TacCacA12B.1.3910.001127
ORF1ab/nsp31492T1492TacCacT22B.1.4390.011834
ORF1ab/nsp31492T1492TacCacT22B.1.5960.000174
ORF1ab/nsp31492T1492TacCacT22D.20.00015
ORF1ab/nsp31492T1492TacCacT22Q.20.001227
ORF1ab/nsp31492T1492TacCacA12R.10.00009
ORF1ab/nsp31492T1492TacCacT12R.10.00009
ORF1ab/nsp31492T1492TacCacT11A.2.30.004739
ORF1ab/nsp31492T1492TacCacT11A.2.5.20.001572
ORF1ab/nsp31492T1492TacCacT11AD.20.000219
ORF1ab/nsp31492T1492TacCacT11AY.10.000396
ORF1ab/nsp31492T1492TacCacT11AY.1140.000231
ORF1ab/nsp31492T1492TacCacA11AY.1190.000035
ORF1ab/nsp31492T1492TacCacT11AY.130.000161
ORF1ab/nsp31492T1492TacCacT11AY.240.000431
ORF1ab/nsp31492T1492TacCacT11AY.29.10.000221
ORF1ab/nsp31492T1492TacCacT11AY.3.10.000085
ORF1ab/nsp31492T1492TacCacT11AY.39.10.00004
ORF1ab/nsp31492T1492TacCacT11AY.460.000104
ORF1ab/nsp31492T1492TacCacT11AY.470.000031
ORF1ab/nsp31492T1492TacCacT11AY.90.000068
ORF1ab/nsp31492T1492TacCacA11AY.9.10.000084
ORF1ab/nsp31492T1492TacCacT11AY.9.20.000037
ORF1ab/nsp31492T1492TacCacT11B.1.1.1350.004695
ORF1ab/nsp31492T1492TacCacT11B.1.1.3170.000412
ORF1ab/nsp31492T1492TacCacT11B.1.1.390.00051
ORF1ab/nsp31492T1492TacCacT11B.1.1.4200.001006
ORF1ab/nsp31492T1492TacCacT11B.1.1.4590.015385
ORF1ab/nsp31492T1492TacCacT11B.1.177.200.001517
ORF1ab/nsp31492T1492TacCacT11B.1.177.210.000076
ORF1ab/nsp31492T1492TacCacT11B.1.177.50.001242
ORF1ab/nsp31492T1492TacCacT11B.1.177.750.001041
ORF1ab/nsp31492T1492TacCacT11B.1.2210.000071
ORF1ab/nsp31492T1492TacCacT11B.1.2580.000067
ORF1ab/nsp31492T1492TacCacT11B.1.3490.000715
ORF1ab/nsp31492T1492TacCacA11B.1.351.20.000303
ORF1ab/nsp31492T1492TacCacT11B.1.36.350.002604
ORF1ab/nsp31492T1492TacCacT11B.1.3890.001002
ORF1ab/nsp31492T1492TacCacT11B.1.4560.003268
ORF1ab/nsp31492T1492TacCacT11B.1.5250.000113
ORF1ab/nsp31492T1492TacCacT11B.1.5610.000397
ORF1ab/nsp31492T1492TacCacT11B.1.5770.000687
ORF1ab/nsp31492T1492TacCacT11B.1.6370.000073
ORF1ab/nsp31492T1492TacCacT11B.1.80.001972
ORF1ab/nsp31492T1492TacCacA11B.6.60.000889
ORF1ab/nsp31492T1492TacCacT11N.30.005814
ORF1ab/nsp31492T1492TacCacT11P.1.10.000318
ORF1ab/nsp31492T1492TacCacT11P.1.70.000319