CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1482 | T1482T | T2300T | syn | acC | acT | 8216 | 7722 | 0.939873 | 7163-7165 |
ORF1ab/nsp3 | 1482 | T1482T | T2300T | syn | acC | acA | 8216 | 343 | 0.0417478 | 7163-7165 |
ORF1ab/nsp3 | 1482 | T1482T | T2300T | syn | acC | acG | 8216 | 151 | 0.0183788 | 7163-7165 |
Details of the mutation T1482T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 7722 | 8216 | All | 0.001477 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 343 | 8216 | All | 0.000066 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 151 | 8216 | All | 0.000029 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2153 | 2153 | B.1.617.1 | 0.277663 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1053 | 1086 | B.1.1.7 | 0.000943 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 23 | 1086 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 10 | 1086 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 758 | 795 | AY.4 | 0.00118 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 37 | 795 | AY.4 | 0.000058 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 396 | 397 | AY.39 | 0.009786 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 397 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 396 | 396 | B.1.429 | 0.009317 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 235 | 262 | AY.43 | 0.001041 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 22 | 262 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 5 | 262 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 149 | 220 | B.1.617.2 | 0.000561 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 54 | 220 | B.1.617.2 | 0.000203 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 17 | 220 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 204 | 204 | B.1.235 | 0.513854 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 141 | 164 | AY.25 | 0.000848 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 23 | 164 | AY.25 | 0.000138 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 137 | 145 | B.1.2 | 0.001206 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 8 | 145 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 126 | 127 | AY.103 | 0.000782 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 127 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 101 | 105 | B.1 | 0.000925 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 4 | 105 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 49 | 96 | AY.5 | 0.001012 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 47 | 96 | AY.5 | 0.000971 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 88 | 88 | AY.4.2.1 | 0.013111 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 84 | 87 | P.1 | 0.001323 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 3 | 87 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 80 | 80 | B.1.1.153 | 0.087623 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 77 | 77 | B.1.427 | 0.003888 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 64 | 66 | B.1.1 | 0.001161 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 2 | 66 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 62 | 63 | AY.36 | 0.009189 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 63 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 58 | 59 | AY.44 | 0.000353 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 59 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 59 | 59 | AY.9.1 | 0.00494 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 57 | 58 | B.1.177 | 0.000751 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 58 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 55 | 55 | B.1.177.81 | 0.010413 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 52 | 54 | AY.3 | 0.000517 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 2 | 54 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 50 | 50 | B.1.1.28 | 0.015562 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 46 | 47 | B.1.160 | 0.001435 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 47 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 44 | 45 | B.1.637 | 0.003215 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 45 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 42 | 42 | AY.102 | 0.001114 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 37 | 37 | AY.113 | 0.005268 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 36 | 36 | B.1.1.70 | 0.012278 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 31 | 35 | B.1.621 | 0.002744 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 4 | 35 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 34 | 34 | B.1.1.207 | 0.040189 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 28 | 28 | B.1.221 | 0.001989 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 27 | 27 | AY.37 | 0.008534 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 25 | 25 | B.1.258 | 0.001664 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 25 | 25 | B.1.265 | 0.031766 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 23 | 23 | B.1.1.318 | 0.00694 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 16 | 22 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 22 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 21 | 22 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 22 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 19 | 19 | B.1.160.31 | 0.153226 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 18 | 18 | AY.14 | 0.001584 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 17 | 18 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 18 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 18 | 18 | C.36.3 | 0.01021 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 8 | 16 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 8 | 16 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 15 | 15 | B.1.575 | 0.004551 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 10 | 13 | B.1.177.21 | 0.000765 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 3 | 13 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 10 | 11 | AY.98 | 0.00079 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 11 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | B.1.1.243 | 0.044898 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | B.1.36.17 | 0.005435 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 11 | 11 | B.1.582 | 0.005397 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 7 | 10 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 3 | 10 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 8 | 9 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 1 | 9 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 9 | 9 | B.1.428 | 0.009184 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 8 | 8 | P.5 | 0.109589 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 7 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 2 | 7 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 7 | D.2 | 0.00045 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 7 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 5 | 6 | B | 0.000639 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 6 | B | 0.000128 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 6 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 6 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | B.1.499 | 0.006303 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 6 | 6 | C.23 | 0.034884 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 5 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 5 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | B.1.1.219 | 0.025 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | B.1.1.358 | 0.172414 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | B.1.110.3 | 0.003592 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 5 | 5 | B.28 | 0.016393 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.1.15 | 0.054054 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.177.41 | 0.01 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.340 | 0.017167 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.422 | 0.003249 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.438 | 0.026144 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 3 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 3 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 3 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 3 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 3 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.1.429 | 0.013825 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | AZ.6 | 0.016807 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.273 | 0.013514 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 2 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 2 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 2 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 2 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 2 | P.4 | 0.003802 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 2 | P.4 | 0.003802 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1482 | T1482T | acC | acT | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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