CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1456N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31456T1456NT2274NnonsynaCtaAt50490.987085-7087
ORF1ab/nsp31456T1456NT2274NnonsynaCTaAC5010.027085-7087

Details of the mutation T1456N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31456T1456NaCtaAt4950All0.000009
ORF1ab/nsp31456T1456NaCTaAC150All0
ORF1ab/nsp31456T1456NaCtaAt77B.1.2210.000497
ORF1ab/nsp31456T1456NaCtaAt77B.1.6280.002467
ORF1ab/nsp31456T1456NaCtaAt45B.1.1.70.000004
ORF1ab/nsp31456T1456NaCTaAC15B.1.1.70.000001
ORF1ab/nsp31456T1456NaCtaAt44AY.250.000024
ORF1ab/nsp31456T1456NaCtaAt44AY.40.000006
ORF1ab/nsp31456T1456NaCtaAt44C.370.000464
ORF1ab/nsp31456T1456NaCtaAt33AY.440.000018
ORF1ab/nsp31456T1456NaCtaAt220.111111
ORF1ab/nsp31456T1456NaCtaAt22AY.260.000057
ORF1ab/nsp31456T1456NaCtaAt22B.1.4090.001563
ORF1ab/nsp31456T1456NaCtaAt11AU.10.001266
ORF1ab/nsp31456T1456NaCtaAt11AY.1110.000183
ORF1ab/nsp31456T1456NaCtaAt11AY.1180.000063
ORF1ab/nsp31456T1456NaCtaAt11AY.34.10.00051
ORF1ab/nsp31456T1456NaCtaAt11AY.390.000025
ORF1ab/nsp31456T1456NaCtaAt11AY.650.000533
ORF1ab/nsp31456T1456NaCtaAt11B.1.1.1210.002427
ORF1ab/nsp31456T1456NaCtaAt11B.1.1.2160.00089
ORF1ab/nsp31456T1456NaCtaAt11B.1.1770.000013
ORF1ab/nsp31456T1456NaCtaAt11D.20.000075