CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1456I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31456T1456IT2274InonsynaCtaTt10548105460.999817085-7087
ORF1ab/nsp31456T1456IT2274InonsynaCTaTA1054820.0001896097085-7087

Details of the mutation T1456I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31456T1456IaCtaTt1054610548All0.002017
ORF1ab/nsp31456T1456IaCTaTA210548All0
ORF1ab/nsp31456T1456IaCtaTt20852085B.1.1.70.001867
ORF1ab/nsp31456T1456IaCtaTt15651565AY.40.002436
ORF1ab/nsp31456T1456IaCtaTt975975B.1.5640.415247
ORF1ab/nsp31456T1456IaCtaTt967967B.1.4970.304375
ORF1ab/nsp31456T1456IaCtaTt702702AY.30.006982
ORF1ab/nsp31456T1456IaCtaTt599599B.1.177.330.985197
ORF1ab/nsp31456T1456IaCtaTt452452B.1.617.20.001702
ORF1ab/nsp31456T1456IaCtaTt385385AY.1030.00239
ORF1ab/nsp31456T1456IaCtaTt188188AY.1020.004985
ORF1ab/nsp31456T1456IaCtaTt182182AY.4.2.10.027116
ORF1ab/nsp31456T1456IaCtaTt152152B.1.20.001338
ORF1ab/nsp31456T1456IaCtaTt128128AY.440.000779
ORF1ab/nsp31456T1456IaCtaTt116116B.1.1770.001527
ORF1ab/nsp31456T1456IaCtaTt112112B.1.10.002032
ORF1ab/nsp31456T1456IaCtaTt7575AY.1140.017333
ORF1ab/nsp31456T1456IaCtaTt7575AY.250.000451
ORF1ab/nsp31456T1456IaCtaTt6666AY.390.001631
ORF1ab/nsp31456T1456IaCtaTt6666B.1.177.40.01393
ORF1ab/nsp31456T1456IaCtaTt6464AY.430.000284
ORF1ab/nsp31456T1456IaCtaTt6363B.1.4290.001482
ORF1ab/nsp31456T1456IaCtaTt6060AY.1050.038585
ORF1ab/nsp31456T1456IaCtaTt5858B.10.000531
ORF1ab/nsp31456T1456IaCtaTt5454AY.29.10.011907
ORF1ab/nsp31456T1456IaCtaTt4848B.1.2340.006333
ORF1ab/nsp31456T1456IaCtaTt4646AY.1080.050717
ORF1ab/nsp31456T1456IaCtaTt4545P.10.000709
ORF1ab/nsp31456T1456IaCtaTt3838B.1.4270.001919
ORF1ab/nsp31456T1456IaCtaTt3737AY.60.001522
ORF1ab/nsp31456T1456IaCtaTt3737B.1.1.5190.001469
ORF1ab/nsp31456T1456IaCtaTt3535B.1.1600.001092
ORF1ab/nsp31456T1456IaCtaTt2727AY.1180.001692
ORF1ab/nsp31456T1456IaCtaTt2727AY.330.001803
ORF1ab/nsp31456T1456IaCtaTt2727AY.4.20.000586
ORF1ab/nsp31456T1456IaCtaTt2525AD.20.005474
ORF1ab/nsp31456T1456IaCtaTt2525AY.200.000972
ORF1ab/nsp31456T1456IaCtaTt2424AE.30.774194
ORF1ab/nsp31456T1456IaCtaTt2323AY.470.000715
ORF1ab/nsp31456T1456IaCtaTt2222AY.98.10.001065
ORF1ab/nsp31456T1456IaCtaTt2222B.1.5260.000517
ORF1ab/nsp31456T1456IaCtaTt2121B.1.1.4640.030928
ORF1ab/nsp31456T1456IaCtaTt2121B.1.1110.024677
ORF1ab/nsp31456T1456IaCtaTt2121B.1.3510.000624
ORF1ab/nsp31456T1456IaCtaTt1919AY.130.003059
ORF1ab/nsp31456T1456IaCtaTt1919AY.50.000392
ORF1ab/nsp31456T1456IaCtaTt1919AY.940.008411
ORF1ab/nsp31456T1456IaCtaTt1919R.10.00171
ORF1ab/nsp31456T1456IaCtaTt1818AY.39.10.000713
ORF1ab/nsp31456T1456IaCtaTt1717AY.260.000481
ORF1ab/nsp31456T1456IaCtaTt1717AY.750.000952
ORF1ab/nsp31456T1456IaCtaTt1717P.1.140.000813
ORF1ab/nsp31456T1456IaCtaTt1616B.1.2430.001113
ORF1ab/nsp31456T1456IaCtaTt1616B.1.4000.006864
ORF1ab/nsp31456T1456IaCtaTt1616B.1.6370.001169
ORF1ab/nsp31456T1456IaCtaTt1515B.1.6210.001328
ORF1ab/nsp31456T1456IaCtaTt1515Q.80.002474
ORF1ab/nsp31456T1456IaCtaTt1313B.1.2210.000923
ORF1ab/nsp31456T1456IaCtaTt1212AY.420.000483
ORF1ab/nsp31456T1456IaCtaTt1010AY.590.005297
ORF1ab/nsp31456T1456IaCtaTt1010B.1.1.2970.022371
ORF1ab/nsp31456T1456IaCtaTt1010B.1.177.150.006309
ORF1ab/nsp31456T1456IaCtaTt1010B.1.177.810.001893
ORF1ab/nsp31456T1456IaCtaTt1010B.1.3490.007148
ORF1ab/nsp31456T1456IaCtaTt99AY.230.000628
ORF1ab/nsp31456T1456IaCtaTt99AY.290.000142
ORF1ab/nsp31456T1456IaCtaTt99AY.460.000937
ORF1ab/nsp31456T1456IaCtaTt99B.1.1.4340.003137
ORF1ab/nsp31456T1456IaCtaTt99B.1.5960.000784
ORF1ab/nsp31456T1456IaCtaTt88AY.1190.000282
ORF1ab/nsp31456T1456IaCtaTt88AY.500.006395
ORF1ab/nsp31456T1456IaCtaTt88B.1.3110.002197
ORF1ab/nsp31456T1456IaCtaTt88B.1.3690.002282
ORF1ab/nsp31456T1456IaCtaTt88D.20.0006
ORF1ab/nsp31456T1456IaCtaTt77AY.1000.000322
ORF1ab/nsp31456T1456IaCtaTt77AY.570.004593
ORF1ab/nsp31456T1456IaCtaTt77B.1.1.5210.037433
ORF1ab/nsp31456T1456IaCtaTt77B.1.177.600.001529
ORF1ab/nsp31456T1456IaCtaTt77C.370.000812
ORF1ab/nsp31456T1456IaCtaTt66AY.450.00073
ORF1ab/nsp31456T1456IaCtaTt66AY.610.000629
ORF1ab/nsp31456T1456IaCtaTt66AY.90.000406
ORF1ab/nsp31456T1456IaCtaTt66AY.9.20.00022
ORF1ab/nsp31456T1456IaCtaTt66AY.920.001724
ORF1ab/nsp31456T1456IaCtaTt66AY.990.006296
ORF1ab/nsp31456T1456IaCtaTt66AY.99.20.000553
ORF1ab/nsp31456T1456IaCtaTt66B.1.1.2140.000333
ORF1ab/nsp31456T1456IaCtaTt66B.1.1.280.001867
ORF1ab/nsp31456T1456IaCtaTt66B.1.5750.00182
ORF1ab/nsp31456T1456IaCtaTt55AY.1060.001674
ORF1ab/nsp31456T1456IaCtaTt55AY.120.10.001605
ORF1ab/nsp31456T1456IaCtaTt55AY.510.004545
ORF1ab/nsp31456T1456IaCtaTt55AY.980.000395
ORF1ab/nsp31456T1456IaCtaTt55B.1.1.2220.00102
ORF1ab/nsp31456T1456IaCtaTt55B.1.2580.000333
ORF1ab/nsp31456T1456IaCtaTt55B.1.3960.003529
ORF1ab/nsp31456T1456IaCtaTt55B.1.5680.005556
ORF1ab/nsp31456T1456IaCtaTt240.111111
ORF1ab/nsp31456T1456IaCTaTA240.111111
ORF1ab/nsp31456T1456IaCtaTt44AY.75.10.000721
ORF1ab/nsp31456T1456IaCtaTt44B.1.1.3060.001754
ORF1ab/nsp31456T1456IaCtaTt44B.1.1.3590.111111
ORF1ab/nsp31456T1456IaCtaTt44B.1.1460.016949
ORF1ab/nsp31456T1456IaCtaTt44B.1.5610.001588
ORF1ab/nsp31456T1456IaCtaTt44B.1.6280.001409
ORF1ab/nsp31456T1456IaCtaTt44P.1.170.000647
ORF1ab/nsp31456T1456IaCtaTt33AY.1040.005952
ORF1ab/nsp31456T1456IaCtaTt33AY.1200.000112
ORF1ab/nsp31456T1456IaCtaTt33AY.1210.000406
ORF1ab/nsp31456T1456IaCtaTt33AY.3.10.000256
ORF1ab/nsp31456T1456IaCtaTt33AY.320.001597
ORF1ab/nsp31456T1456IaCtaTt33AY.340.000291
ORF1ab/nsp31456T1456IaCtaTt33AY.46.60.000217
ORF1ab/nsp31456T1456IaCtaTt33AY.690.00056
ORF1ab/nsp31456T1456IaCtaTt33AY.7.10.000338
ORF1ab/nsp31456T1456IaCtaTt33AY.9.10.000251
ORF1ab/nsp31456T1456IaCtaTt33B0.000383
ORF1ab/nsp31456T1456IaCtaTt33B.1.1.1890.004539
ORF1ab/nsp31456T1456IaCtaTt33B.1.1.3170.001235
ORF1ab/nsp31456T1456IaCtaTt33B.1.1.500.002037
ORF1ab/nsp31456T1456IaCtaTt33B.1.1.570.034483
ORF1ab/nsp31456T1456IaCtaTt33B.1.177.430.004431
ORF1ab/nsp31456T1456IaCtaTt33B.1.2100.006397
ORF1ab/nsp31456T1456IaCtaTt33B.1.2320.001612
ORF1ab/nsp31456T1456IaCtaTt33B.1.2400.000647
ORF1ab/nsp31456T1456IaCtaTt33B.1.3360.007317
ORF1ab/nsp31456T1456IaCtaTt33B.1.360.000438
ORF1ab/nsp31456T1456IaCtaTt33B.1.5230.007353
ORF1ab/nsp31456T1456IaCtaTt33B.1.6050.017857
ORF1ab/nsp31456T1456IaCtaTt33P.1.100.000808
ORF1ab/nsp31456T1456IaCtaTt33P.20.00056
ORF1ab/nsp31456T1456IaCtaTt22AY.10.000791
ORF1ab/nsp31456T1456IaCtaTt22AY.1130.000285
ORF1ab/nsp31456T1456IaCtaTt22AY.1170.000169
ORF1ab/nsp31456T1456IaCtaTt22AY.120.000632
ORF1ab/nsp31456T1456IaCtaTt22AY.120.2.10.000997
ORF1ab/nsp31456T1456IaCtaTt22AY.46.40.000329
ORF1ab/nsp31456T1456IaCtaTt22AY.530.000575
ORF1ab/nsp31456T1456IaCtaTt22AY.550.001835
ORF1ab/nsp31456T1456IaCtaTt22AY.600.001876
ORF1ab/nsp31456T1456IaCtaTt22AY.660.002139
ORF1ab/nsp31456T1456IaCtaTt22AY.670.000929
ORF1ab/nsp31456T1456IaCtaTt22AY.830.003448
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.1280.014184
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.1410.004024
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.2530.005013
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.2840.000215
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.3050.007722
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.3260.003521
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.3800.019608
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.390.001019
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.3970.004505
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.3980.006452
ORF1ab/nsp31456T1456IaCtaTt22B.1.1.5180.012658
ORF1ab/nsp31456T1456IaCtaTt22B.1.1420.005797
ORF1ab/nsp31456T1456IaCtaTt22B.1.177.210.000153
ORF1ab/nsp31456T1456IaCtaTt22B.1.177.730.001133
ORF1ab/nsp31456T1456IaCtaTt22B.1.177.860.000367
ORF1ab/nsp31456T1456IaCtaTt22B.1.258.170.000208
ORF1ab/nsp31456T1456IaCtaTt22B.1.36.180.00084
ORF1ab/nsp31456T1456IaCtaTt22B.1.36.290.001035
ORF1ab/nsp31456T1456IaCtaTt22B.1.4090.001563
ORF1ab/nsp31456T1456IaCtaTt22B.1.466.20.000782
ORF1ab/nsp31456T1456IaCtaTt22B.1.564.10.003155
ORF1ab/nsp31456T1456IaCtaTt22B.1.5820.000981
ORF1ab/nsp31456T1456IaCtaTt22B.1.617.10.000258
ORF1ab/nsp31456T1456IaCtaTt22B.60.00182
ORF1ab/nsp31456T1456IaCtaTt11A.2.50.000499
ORF1ab/nsp31456T1456IaCtaTt11AY.1010.00049
ORF1ab/nsp31456T1456IaCtaTt11AY.1070.000466
ORF1ab/nsp31456T1456IaCtaTt11AY.1110.000183
ORF1ab/nsp31456T1456IaCtaTt11AY.140.000088
ORF1ab/nsp31456T1456IaCtaTt11AY.170.008197
ORF1ab/nsp31456T1456IaCtaTt11AY.300.000396
ORF1ab/nsp31456T1456IaCtaTt11AY.360.000148
ORF1ab/nsp31456T1456IaCtaTt11AY.370.000316
ORF1ab/nsp31456T1456IaCtaTt11AY.4.10.000737
ORF1ab/nsp31456T1456IaCtaTt11AY.4.40.000409
ORF1ab/nsp31456T1456IaCtaTt11AY.4.50.000107
ORF1ab/nsp31456T1456IaCtaTt11AY.540.000095
ORF1ab/nsp31456T1456IaCtaTt11AY.630.000387
ORF1ab/nsp31456T1456IaCtaTt11AY.680.000274
ORF1ab/nsp31456T1456IaCtaTt11AY.700.000209
ORF1ab/nsp31456T1456IaCtaTt11AY.710.000475
ORF1ab/nsp31456T1456IaCtaTt11AY.730.000665
ORF1ab/nsp31456T1456IaCtaTt11AY.840.000437
ORF1ab/nsp31456T1456IaCtaTt11AY.860.00083
ORF1ab/nsp31456T1456IaCtaTt11AY.9.2.10.001976
ORF1ab/nsp31456T1456IaCtaTt11AY.930.000273
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1480.008772
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1530.001095
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1570.000913
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1590.004673
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1740.003378
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.1860.003436
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2190.005
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2250.007194
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.3080.011765
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.3330.001076
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.4070.041667
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.4090.002833
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.4100.037037
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.450.014085
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.5250.005464
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.540.003021
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.630.000386
ORF1ab/nsp31456T1456IaCtaTt11B.1.1.700.000341
ORF1ab/nsp31456T1456IaCtaTt11B.1.1310.008772
ORF1ab/nsp31456T1456IaCtaTt11B.1.160.120.00641
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.180.00116
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.230.003236
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.320.00135
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.440.000519
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.520.001757
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.620.001192
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.80.000752
ORF1ab/nsp31456T1456IaCtaTt11B.1.177.830.001481
ORF1ab/nsp31456T1456IaCtaTt11B.1.2060.000816
ORF1ab/nsp31456T1456IaCtaTt11B.1.2840.013158
ORF1ab/nsp31456T1456IaCtaTt11B.1.3430.020833
ORF1ab/nsp31456T1456IaCtaTt11B.1.3460.001311
ORF1ab/nsp31456T1456IaCtaTt11B.1.3560.001727
ORF1ab/nsp31456T1456IaCtaTt11B.1.36.170.000494
ORF1ab/nsp31456T1456IaCtaTt11B.1.36.220.001208
ORF1ab/nsp31456T1456IaCtaTt11B.1.36.240.006173
ORF1ab/nsp31456T1456IaCtaTt11B.1.36.250.002208
ORF1ab/nsp31456T1456IaCtaTt11B.1.36.260.002857
ORF1ab/nsp31456T1456IaCtaTt11B.1.3900.010638
ORF1ab/nsp31456T1456IaCtaTt11B.1.4990.00105
ORF1ab/nsp31456T1456IaCtaTt11B.1.5170.000427
ORF1ab/nsp31456T1456IaCtaTt11B.1.5250.000113
ORF1ab/nsp31456T1456IaCtaTt11B.1.5410.004425
ORF1ab/nsp31456T1456IaCtaTt11B.1.5490.007194
ORF1ab/nsp31456T1456IaCtaTt11B.1.5950.000261
ORF1ab/nsp31456T1456IaCtaTt11B.1.6020.006536
ORF1ab/nsp31456T1456IaCtaTt11B.1.6090.000479
ORF1ab/nsp31456T1456IaCtaTt11B.1.88.10.004808
ORF1ab/nsp31456T1456IaCtaTt11B.1.90.006173
ORF1ab/nsp31456T1456IaCtaTt11B.4.10.018868
ORF1ab/nsp31456T1456IaCtaTt11B.400.000364
ORF1ab/nsp31456T1456IaCtaTt11B.450.003831
ORF1ab/nsp31456T1456IaCtaTt11B.520.010101
ORF1ab/nsp31456T1456IaCtaTt11B.6.60.000889
ORF1ab/nsp31456T1456IaCtaTt11C.320.023256
ORF1ab/nsp31456T1456IaCtaTt11C.60.037037
ORF1ab/nsp31456T1456IaCtaTt11P.1.150.000232
ORF1ab/nsp31456T1456IaCtaTt11P.1.70.000319
ORF1ab/nsp31456T1456IaCtaTt11P.30.001595
ORF1ab/nsp31456T1456IaCtaTt11Q.10.000126
ORF1ab/nsp31456T1456IaCtaTt11W.30.005263