CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1429T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31429T1429TT2247TsynacCacT259725010.9630347004-7006
ORF1ab/nsp31429T1429TT2247TsynacCacA2597870.03350027004-7006
ORF1ab/nsp31429T1429TT2247TsynacCacG259790.003465547004-7006

Details of the mutation T1429T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31429T1429TacCacT25012597All0.000478
ORF1ab/nsp31429T1429TacCacA872597All0.000017
ORF1ab/nsp31429T1429TacCacG92597All0.000002
ORF1ab/nsp31429T1429TacCacT426426B.1.36.380.699507
ORF1ab/nsp31429T1429TacCacT257274B.1.1.70.00023
ORF1ab/nsp31429T1429TacCacA17274B.1.1.70.000015
ORF1ab/nsp31429T1429TacCacT229229AY.140.020155
ORF1ab/nsp31429T1429TacCacT130130B.1.4290.003059
ORF1ab/nsp31429T1429TacCacT125129AY.40.000195
ORF1ab/nsp31429T1429TacCacA4129AY.40.000006
ORF1ab/nsp31429T1429TacCacT120120B.1.3490.085776
ORF1ab/nsp31429T1429TacCacT8793AY.440.00053
ORF1ab/nsp31429T1429TacCacA593AY.440.00003
ORF1ab/nsp31429T1429TacCacG193AY.440.000006
ORF1ab/nsp31429T1429TacCacT8285B.10.000751
ORF1ab/nsp31429T1429TacCacG385B.10.000027
ORF1ab/nsp31429T1429TacCacT8080AB.10.655738
ORF1ab/nsp31429T1429TacCacT7177B.1.617.20.000267
ORF1ab/nsp31429T1429TacCacA477B.1.617.20.000015
ORF1ab/nsp31429T1429TacCacG277B.1.617.20.000008
ORF1ab/nsp31429T1429TacCacT6068B.1.20.000528
ORF1ab/nsp31429T1429TacCacA668B.1.20.000053
ORF1ab/nsp31429T1429TacCacG268B.1.20.000018
ORF1ab/nsp31429T1429TacCacT5151P.10.000803
ORF1ab/nsp31429T1429TacCacT4747AY.1030.000292
ORF1ab/nsp31429T1429TacCacT4045AY.430.000177
ORF1ab/nsp31429T1429TacCacA545AY.430.000022
ORF1ab/nsp31429T1429TacCacT4141B.1.1.3941
ORF1ab/nsp31429T1429TacCacT2828B.1.177.180.032483
ORF1ab/nsp31429T1429TacCacT2021B.1.5250.002263
ORF1ab/nsp31429T1429TacCacA121B.1.5250.000113
ORF1ab/nsp31429T1429TacCacT1919AY.250.000114
ORF1ab/nsp31429T1429TacCacA1018AY.30.000099
ORF1ab/nsp31429T1429TacCacT818AY.30.00008
ORF1ab/nsp31429T1429TacCacT1717B.1.36.330.128788
ORF1ab/nsp31429T1429TacCacT1616AY.50.00033
ORF1ab/nsp31429T1429TacCacT1616AY.640.009524
ORF1ab/nsp31429T1429TacCacT1116B.1.2210.000781
ORF1ab/nsp31429T1429TacCacA516B.1.2210.000355
ORF1ab/nsp31429T1429TacCacT1415B.1.10.000254
ORF1ab/nsp31429T1429TacCacA115B.1.10.000018
ORF1ab/nsp31429T1429TacCacT1414AY.60.000576
ORF1ab/nsp31429T1429TacCacT1414B.1.1600.000437
ORF1ab/nsp31429T1429TacCacT1414B.1.360.002043
ORF1ab/nsp31429T1429TacCacT1313AY.4.20.000282
ORF1ab/nsp31429T1429TacCacT1313B.1.2580.000865
ORF1ab/nsp31429T1429TacCacT1313B.1.258.170.001352
ORF1ab/nsp31429T1429TacCacT1212AY.290.000189
ORF1ab/nsp31429T1429TacCacT1212B.1.1770.000158
ORF1ab/nsp31429T1429TacCacT1212B.1.3510.000357
ORF1ab/nsp31429T1429TacCacT1111AY.260.000311
ORF1ab/nsp31429T1429TacCacT1010B.1.2340.001319
ORF1ab/nsp31429T1429TacCacT910B.1.617.10.001161
ORF1ab/nsp31429T1429TacCacA110B.1.617.10.000129
ORF1ab/nsp31429T1429TacCacT1010B.1.6280.003524
ORF1ab/nsp31429T1429TacCacT99AY.1000.000414
ORF1ab/nsp31429T1429TacCacT89AY.1190.000282
ORF1ab/nsp31429T1429TacCacA19AY.1190.000035
ORF1ab/nsp31429T1429TacCacT99B.1.1.3060.003946
ORF1ab/nsp31429T1429TacCacT88AY.1180.000501
ORF1ab/nsp31429T1429TacCacT78AY.390.000173
ORF1ab/nsp31429T1429TacCacA18AY.390.000025
ORF1ab/nsp31429T1429TacCacT88AY.460.000833
ORF1ab/nsp31429T1429TacCacT88B.1.6250.018824
ORF1ab/nsp31429T1429TacCacT77AY.1020.000186
ORF1ab/nsp31429T1429TacCacT77AY.420.000282
ORF1ab/nsp31429T1429TacCacT66AY.1130.000854
ORF1ab/nsp31429T1429TacCacT66AY.190.006842
ORF1ab/nsp31429T1429TacCacT66AY.270.000388
ORF1ab/nsp31429T1429TacCacT66AY.850.002563
ORF1ab/nsp31429T1429TacCacT66B.1.1.5190.000238
ORF1ab/nsp31429T1429TacCacT66B.1.177.420.005367
ORF1ab/nsp31429T1429TacCacT66B.1.3670.004754
ORF1ab/nsp31429T1429TacCacT55AY.1160.001434
ORF1ab/nsp31429T1429TacCacT45AY.200.000155
ORF1ab/nsp31429T1429TacCacA15AY.200.000039
ORF1ab/nsp31429T1429TacCacT55AY.39.10.000198
ORF1ab/nsp31429T1429TacCacA55AY.46.40.000823
ORF1ab/nsp31429T1429TacCacT55AY.9.10.000419
ORF1ab/nsp31429T1429TacCacT55B.1.1.3090.02924
ORF1ab/nsp31429T1429TacCacT55B.1.160.140.010593
ORF1ab/nsp31429T1429TacCacT55P.1.150.001162
ORF1ab/nsp31429T1429TacCacT55P.1.20.00578
ORF1ab/nsp31429T1429TacCacA34AD.20.000657
ORF1ab/nsp31429T1429TacCacT14AD.20.000219
ORF1ab/nsp31429T1429TacCacT44AY.320.00213
ORF1ab/nsp31429T1429TacCacT44AY.340.000388
ORF1ab/nsp31429T1429TacCacT34AY.470.000093
ORF1ab/nsp31429T1429TacCacA14AY.470.000031
ORF1ab/nsp31429T1429TacCacT44AY.490.01278
ORF1ab/nsp31429T1429TacCacT44AY.5.30.00135
ORF1ab/nsp31429T1429TacCacT34AY.5.40.00083
ORF1ab/nsp31429T1429TacCacA14AY.5.40.000277
ORF1ab/nsp31429T1429TacCacT44AY.98.10.000194
ORF1ab/nsp31429T1429TacCacT44B.1.1.3110.001433
ORF1ab/nsp31429T1429TacCacT44B.1.1.3170.001647
ORF1ab/nsp31429T1429TacCacT44B.1.177.440.002076
ORF1ab/nsp31429T1429TacCacT44B.1.2430.000278
ORF1ab/nsp31429T1429TacCacT34P.1.140.000143
ORF1ab/nsp31429T1429TacCacA14P.1.140.000048
ORF1ab/nsp31429T1429TacCacT33AY.370.000948
ORF1ab/nsp31429T1429TacCacT33AY.450.000365
ORF1ab/nsp31429T1429TacCacT33AY.540.000286
ORF1ab/nsp31429T1429TacCacT23AY.610.00021
ORF1ab/nsp31429T1429TacCacA13AY.610.000105
ORF1ab/nsp31429T1429TacCacT33AY.930.000819
ORF1ab/nsp31429T1429TacCacT33AY.980.000237
ORF1ab/nsp31429T1429TacCacT33AY.99.20.000276
ORF1ab/nsp31429T1429TacCacT33AZ.10.002602
ORF1ab/nsp31429T1429TacCacT33B.1.1.1570.00274
ORF1ab/nsp31429T1429TacCacT33B.1.1.2310.009288
ORF1ab/nsp31429T1429TacCacT33B.1.1.2530.007519
ORF1ab/nsp31429T1429TacCacT33B.1.1.3010.003538
ORF1ab/nsp31429T1429TacCacT33B.1.1.3180.000905
ORF1ab/nsp31429T1429TacCacT33B.1.1.5000.06
ORF1ab/nsp31429T1429TacCacT33B.1.1.890.018182
ORF1ab/nsp31429T1429TacCacT33B.1.177.860.00055
ORF1ab/nsp31429T1429TacCacT33B.1.4270.000151
ORF1ab/nsp31429T1429TacCacA23B.1.6370.000146
ORF1ab/nsp31429T1429TacCacT13B.1.6370.000073
ORF1ab/nsp31429T1429TacCacT22A.210.00554
ORF1ab/nsp31429T1429TacCacA22A.23.10.001408
ORF1ab/nsp31429T1429TacCacT22AY.1140.000462
ORF1ab/nsp31429T1429TacCacT22AY.1200.000074
ORF1ab/nsp31429T1429TacCacT22AY.230.000139
ORF1ab/nsp31429T1429TacCacT22AY.950.001522
ORF1ab/nsp31429T1429TacCacT22B.1.1.1610.007067
ORF1ab/nsp31429T1429TacCacT22B.1.1.2140.000111
ORF1ab/nsp31429T1429TacCacT22B.1.1.2160.001781
ORF1ab/nsp31429T1429TacCacT22B.1.1.3980.006452
ORF1ab/nsp31429T1429TacCacT22B.1.1.4480.004065
ORF1ab/nsp31429T1429TacCacT22B.1.1.710.012121
ORF1ab/nsp31429T1429TacCacT22B.1.1110.00235
ORF1ab/nsp31429T1429TacCacT22B.1.177.210.000153
ORF1ab/nsp31429T1429TacCacT22B.1.177.340.105263
ORF1ab/nsp31429T1429TacCacT22B.1.177.430.002954
ORF1ab/nsp31429T1429TacCacT22B.1.177.680.030303
ORF1ab/nsp31429T1429TacCacT22B.1.2060.001631
ORF1ab/nsp31429T1429TacCacT22B.1.3960.001411
ORF1ab/nsp31429T1429TacCacT22Q.10.000253
ORF1ab/nsp31429T1429TacCacT110.055556
ORF1ab/nsp31429T1429TacCacA11A.2.50.000499
ORF1ab/nsp31429T1429TacCacT11AK.10.012658
ORF1ab/nsp31429T1429TacCacT11AY.1080.001103
ORF1ab/nsp31429T1429TacCacT11AY.1170.000085
ORF1ab/nsp31429T1429TacCacT11AY.120.000316
ORF1ab/nsp31429T1429TacCacT11AY.120.20.001285
ORF1ab/nsp31429T1429TacCacT11AY.130.000161
ORF1ab/nsp31429T1429TacCacT11AY.3.10.000085
ORF1ab/nsp31429T1429TacCacA11AY.330.000067
ORF1ab/nsp31429T1429TacCacT11AY.380.000499
ORF1ab/nsp31429T1429TacCacA11AY.4.2.10.000149
ORF1ab/nsp31429T1429TacCacT11AY.410.000294
ORF1ab/nsp31429T1429TacCacT11AY.560.001605
ORF1ab/nsp31429T1429TacCacA11AY.590.00053
ORF1ab/nsp31429T1429TacCacT11AY.670.000464
ORF1ab/nsp31429T1429TacCacT11AY.680.000274
ORF1ab/nsp31429T1429TacCacT11AY.750.000056
ORF1ab/nsp31429T1429TacCacT11AY.75.10.00018
ORF1ab/nsp31429T1429TacCacT11AY.790.001211
ORF1ab/nsp31429T1429TacCacT11AY.840.000437
ORF1ab/nsp31429T1429TacCacT11AY.860.00083
ORF1ab/nsp31429T1429TacCacT11AY.90.000068
ORF1ab/nsp31429T1429TacCacT11AY.9.20.000037
ORF1ab/nsp31429T1429TacCacT11AY.920.000287
ORF1ab/nsp31429T1429TacCacT11AY.960.002075
ORF1ab/nsp31429T1429TacCacA11B0.000128
ORF1ab/nsp31429T1429TacCacT11B.1.1.10.000327
ORF1ab/nsp31429T1429TacCacT11B.1.1.1840.058824
ORF1ab/nsp31429T1429TacCacG11B.1.1.1940.00495
ORF1ab/nsp31429T1429TacCacT11B.1.1.270.00565
ORF1ab/nsp31429T1429TacCacT11B.1.1.2770.000759
ORF1ab/nsp31429T1429TacCacT11B.1.1.3690.000446
ORF1ab/nsp31429T1429TacCacT11B.1.1.370.000193
ORF1ab/nsp31429T1429TacCacT11B.1.1.3720.000689
ORF1ab/nsp31429T1429TacCacT11B.1.1.4820.023256
ORF1ab/nsp31429T1429TacCacT11B.1.1.4870.005587
ORF1ab/nsp31429T1429TacCacT11B.1.1.630.000386
ORF1ab/nsp31429T1429TacCacT11B.1.1.950.019608
ORF1ab/nsp31429T1429TacCacT11B.1.110.30.000718
ORF1ab/nsp31429T1429TacCacT11B.1.1260.001276
ORF1ab/nsp31429T1429TacCacT11B.1.160.90.007194
ORF1ab/nsp31429T1429TacCacT11B.1.177.350.000691
ORF1ab/nsp31429T1429TacCacT11B.1.177.600.000218
ORF1ab/nsp31429T1429TacCacA11B.1.230.006061
ORF1ab/nsp31429T1429TacCacT11B.1.2320.000537
ORF1ab/nsp31429T1429TacCacT11B.1.2400.000216
ORF1ab/nsp31429T1429TacCacT11B.1.351.30.000876
ORF1ab/nsp31429T1429TacCacT11B.1.36.180.00042
ORF1ab/nsp31429T1429TacCacT11B.1.36.220.001208
ORF1ab/nsp31429T1429TacCacA11B.1.36.290.000517
ORF1ab/nsp31429T1429TacCacT11B.1.3690.000285
ORF1ab/nsp31429T1429TacCacA11B.1.4040.001302
ORF1ab/nsp31429T1429TacCacT11B.1.466.20.000391
ORF1ab/nsp31429T1429TacCacT11B.1.5090.000866
ORF1ab/nsp31429T1429TacCacT11B.1.5260.000024
ORF1ab/nsp31429T1429TacCacT11B.1.5400.009709
ORF1ab/nsp31429T1429TacCacT11B.1.5750.000303
ORF1ab/nsp31429T1429TacCacT11B.1.5950.000261
ORF1ab/nsp31429T1429TacCacT11B.1.5980.016949
ORF1ab/nsp31429T1429TacCacT11B.1.6000.005848
ORF1ab/nsp31429T1429TacCacT11B.1.6180.004032
ORF1ab/nsp31429T1429TacCacT11B.1.6190.000871
ORF1ab/nsp31429T1429TacCacT11B.1.619.10.000641
ORF1ab/nsp31429T1429TacCacT11B.200.023256
ORF1ab/nsp31429T1429TacCacT11B.610.005747
ORF1ab/nsp31429T1429TacCacT11C.36.20.034483
ORF1ab/nsp31429T1429TacCacT11C.370.000116
ORF1ab/nsp31429T1429TacCacA11C.37.10.002618
ORF1ab/nsp31429T1429TacCacT11P.1.120.000484
ORF1ab/nsp31429T1429TacCacT11P.1.170.000162
ORF1ab/nsp31429T1429TacCacT11R.10.00009