CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1306T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31306T1306TT2124TsynacTacC162613340.8204186635-6637
ORF1ab/nsp31306T1306TT2124TsynacTacA16261600.0984016635-6637
ORF1ab/nsp31306T1306TT2124TsynacTacG16261320.08118086635-6637

Details of the mutation T1306T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31306T1306TacTacC13341626All0.000255
ORF1ab/nsp31306T1306TacTacA1601626All0.000031
ORF1ab/nsp31306T1306TacTacG1321626All0.000025
ORF1ab/nsp31306T1306TacTacC11331160B.1.1.70.001014
ORF1ab/nsp31306T1306TacTacG241160B.1.1.70.000021
ORF1ab/nsp31306T1306TacTacA31160B.1.1.70.000003
ORF1ab/nsp31306T1306TacTacA83171AY.40.000129
ORF1ab/nsp31306T1306TacTacG71171AY.40.000111
ORF1ab/nsp31306T1306TacTacC17171AY.40.000026
ORF1ab/nsp31306T1306TacTacC5051AY.4.20.001084
ORF1ab/nsp31306T1306TacTacG151AY.4.20.000022
ORF1ab/nsp31306T1306TacTacA3232R.10.00288
ORF1ab/nsp31306T1306TacTacC2626AY.440.000158
ORF1ab/nsp31306T1306TacTacC1419B.1.617.20.000053
ORF1ab/nsp31306T1306TacTacA319B.1.617.20.000011
ORF1ab/nsp31306T1306TacTacG219B.1.617.20.000008
ORF1ab/nsp31306T1306TacTacA714AY.30.00007
ORF1ab/nsp31306T1306TacTacG614AY.30.00006
ORF1ab/nsp31306T1306TacTacC114AY.30.00001
ORF1ab/nsp31306T1306TacTacC1414P.1.150.003253
ORF1ab/nsp31306T1306TacTacA1012AY.60.000411
ORF1ab/nsp31306T1306TacTacC212AY.60.000082
ORF1ab/nsp31306T1306TacTacC610AY.1030.000037
ORF1ab/nsp31306T1306TacTacA410AY.1030.000025
ORF1ab/nsp31306T1306TacTacC68B.10.000055
ORF1ab/nsp31306T1306TacTacA28B.10.000018
ORF1ab/nsp31306T1306TacTacC77B.1.2580.000466
ORF1ab/nsp31306T1306TacTacC77P.20.001306
ORF1ab/nsp31306T1306TacTacG66B.1.1.3810.24
ORF1ab/nsp31306T1306TacTacC46B.1.1.5190.000159
ORF1ab/nsp31306T1306TacTacA26B.1.1.5190.000079
ORF1ab/nsp31306T1306TacTacC55B.1.3690.001426
ORF1ab/nsp31306T1306TacTacG24AY.250.000012
ORF1ab/nsp31306T1306TacTacC24AY.250.000012
ORF1ab/nsp31306T1306TacTacG44AY.9.10.000335
ORF1ab/nsp31306T1306TacTacC330.166667
ORF1ab/nsp31306T1306TacTacG23AY.230.000139
ORF1ab/nsp31306T1306TacTacA13AY.230.00007
ORF1ab/nsp31306T1306TacTacA33AY.320.001597
ORF1ab/nsp31306T1306TacTacC23AY.430.000009
ORF1ab/nsp31306T1306TacTacA13AY.430.000004
ORF1ab/nsp31306T1306TacTacC33B.1.1.630.001157
ORF1ab/nsp31306T1306TacTacC22A.50.003846
ORF1ab/nsp31306T1306TacTacC22AY.1110.000366
ORF1ab/nsp31306T1306TacTacC22AY.300.000791
ORF1ab/nsp31306T1306TacTacG22AY.450.000243
ORF1ab/nsp31306T1306TacTacG12B0.000128
ORF1ab/nsp31306T1306TacTacA12B0.000128
ORF1ab/nsp31306T1306TacTacC22B.1.1.3060.000877
ORF1ab/nsp31306T1306TacTacC12B.1.1770.000013
ORF1ab/nsp31306T1306TacTacG12B.1.1770.000013
ORF1ab/nsp31306T1306TacTacC22B.1.177.810.000379
ORF1ab/nsp31306T1306TacTacA11AY.1080.001103
ORF1ab/nsp31306T1306TacTacC11AY.1130.000142
ORF1ab/nsp31306T1306TacTacG11AY.1170.000085
ORF1ab/nsp31306T1306TacTacC11AY.1200.000037
ORF1ab/nsp31306T1306TacTacA11AY.200.000039
ORF1ab/nsp31306T1306TacTacC11AY.23.10.000417
ORF1ab/nsp31306T1306TacTacA11AY.330.000067
ORF1ab/nsp31306T1306TacTacG11AY.370.000316
ORF1ab/nsp31306T1306TacTacG11AY.390.000025
ORF1ab/nsp31306T1306TacTacA11AY.4.50.000107
ORF1ab/nsp31306T1306TacTacG11AY.46.10.001027
ORF1ab/nsp31306T1306TacTacG11AY.50.000021
ORF1ab/nsp31306T1306TacTacC11AY.680.000274
ORF1ab/nsp31306T1306TacTacA11AY.690.000187
ORF1ab/nsp31306T1306TacTacA11AY.80.000606
ORF1ab/nsp31306T1306TacTacG11AY.890.004902
ORF1ab/nsp31306T1306TacTacC11AY.99.20.000092
ORF1ab/nsp31306T1306TacTacC11B.1.10.000018
ORF1ab/nsp31306T1306TacTacA11B.1.1.2200.001859
ORF1ab/nsp31306T1306TacTacC11B.1.1.2980.000862
ORF1ab/nsp31306T1306TacTacC11B.1.1.4320.001266
ORF1ab/nsp31306T1306TacTacC11B.1.1.4640.001473
ORF1ab/nsp31306T1306TacTacG11B.1.1600.000031
ORF1ab/nsp31306T1306TacTacC11B.1.177.150.000631
ORF1ab/nsp31306T1306TacTacC11B.1.177.330.001645
ORF1ab/nsp31306T1306TacTacC11B.1.177.420.000894
ORF1ab/nsp31306T1306TacTacA11B.1.177.540.000606
ORF1ab/nsp31306T1306TacTacC11B.1.20.000009
ORF1ab/nsp31306T1306TacTacG11B.1.2210.000071
ORF1ab/nsp31306T1306TacTacG11B.1.221.20.004016
ORF1ab/nsp31306T1306TacTacC11B.1.2340.000132
ORF1ab/nsp31306T1306TacTacC11B.1.2400.000216
ORF1ab/nsp31306T1306TacTacC11B.1.2980.002114
ORF1ab/nsp31306T1306TacTacC11B.1.4330.003195
ORF1ab/nsp31306T1306TacTacC11B.1.438.10.000107
ORF1ab/nsp31306T1306TacTacG11B.1.5250.000113
ORF1ab/nsp31306T1306TacTacC11B.1.5960.000087
ORF1ab/nsp31306T1306TacTacC11C.370.000116
ORF1ab/nsp31306T1306TacTacC11P.10.000016