CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1306I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31306T1306IT2124InonsynaCtaTt13122131200.9998486635-6637
ORF1ab/nsp31306T1306IT2124InonsynaCTaTC1312220.0001524166635-6637

Details of the mutation T1306I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31306T1306IaCtaTt1312013122All0.002509
ORF1ab/nsp31306T1306IaCTaTC213122All0
ORF1ab/nsp31306T1306IaCtaTt54915493B.1.1.70.004916
ORF1ab/nsp31306T1306IaCTaTC25493B.1.1.70.000002
ORF1ab/nsp31306T1306IaCtaTt16201620Q.20.993865
ORF1ab/nsp31306T1306IaCtaTt11441144B.1.1.2140.063443
ORF1ab/nsp31306T1306IaCtaTt503503AY.40.000783
ORF1ab/nsp31306T1306IaCtaTt395395B.1.1770.005201
ORF1ab/nsp31306T1306IaCtaTt364364AY.1030.00226
ORF1ab/nsp31306T1306IaCtaTt317317B.1.2210.022517
ORF1ab/nsp31306T1306IaCtaTt208208B.10.001905
ORF1ab/nsp31306T1306IaCtaTt202202B.1.617.20.000761
ORF1ab/nsp31306T1306IaCtaTt176176AY.30.001751
ORF1ab/nsp31306T1306IaCtaTt172172B.1.10.00312
ORF1ab/nsp31306T1306IaCtaTt147147AY.260.004162
ORF1ab/nsp31306T1306IaCtaTt139139AY.430.000616
ORF1ab/nsp31306T1306IaCtaTt139139AY.440.000846
ORF1ab/nsp31306T1306IaCtaTt113113P.10.00178
ORF1ab/nsp31306T1306IaCtaTt112112AY.250.000674
ORF1ab/nsp31306T1306IaCtaTt8888B.1.20.000775
ORF1ab/nsp31306T1306IaCtaTt7979B.1.5230.193627
ORF1ab/nsp31306T1306IaCtaTt7070B.1.3510.002081
ORF1ab/nsp31306T1306IaCtaTt5151AY.420.002052
ORF1ab/nsp31306T1306IaCtaTt4646AY.470.001431
ORF1ab/nsp31306T1306IaCtaTt4040P.1.140.001912
ORF1ab/nsp31306T1306IaCtaTt3939AY.50.000805
ORF1ab/nsp31306T1306IaCtaTt3737AE.80.018093
ORF1ab/nsp31306T1306IaCtaTt3737AY.200.001438
ORF1ab/nsp31306T1306IaCtaTt3737B.1.1600.001154
ORF1ab/nsp31306T1306IaCtaTt3232B.1.1.2220.006528
ORF1ab/nsp31306T1306IaCtaTt3131B.1.177.720.105085
ORF1ab/nsp31306T1306IaCtaTt3131B.1.4270.001565
ORF1ab/nsp31306T1306IaCtaTt3030AY.1020.000795
ORF1ab/nsp31306T1306IaCtaTt3030AY.390.000741
ORF1ab/nsp31306T1306IaCtaTt2727AY.140.002376
ORF1ab/nsp31306T1306IaCtaTt2727B.1.428.30.346154
ORF1ab/nsp31306T1306IaCtaTt2727B.1.6370.001973
ORF1ab/nsp31306T1306IaCtaTt2626AY.290.00041
ORF1ab/nsp31306T1306IaCtaTt2525B.1.177.600.005461
ORF1ab/nsp31306T1306IaCtaTt2424AY.450.00292
ORF1ab/nsp31306T1306IaCtaTt2323B.1.1.5190.000913
ORF1ab/nsp31306T1306IaCtaTt2222C.370.002553
ORF1ab/nsp31306T1306IaCtaTt2121AY.610.0022
ORF1ab/nsp31306T1306IaCtaTt2121B.1.177.810.003976
ORF1ab/nsp31306T1306IaCtaTt2020B.1.4290.000471
ORF1ab/nsp31306T1306IaCtaTt1919AY.270.00123
ORF1ab/nsp31306T1306IaCtaTt1919B.1.1390.01393
ORF1ab/nsp31306T1306IaCtaTt1919P.20.003546
ORF1ab/nsp31306T1306IaCtaTt1515B.1.5950.003914
ORF1ab/nsp31306T1306IaCtaTt1414B.1.177.40.002955
ORF1ab/nsp31306T1306IaCtaTt1414B.1.177.570.003934
ORF1ab/nsp31306T1306IaCtaTt1414B.1.5260.000329
ORF1ab/nsp31306T1306IaCtaTt1414P.1.150.003253
ORF1ab/nsp31306T1306IaCtaTt1313AY.39.10.000515
ORF1ab/nsp31306T1306IaCtaTt1313B.1.2430.000905
ORF1ab/nsp31306T1306IaCtaTt1313B.1.2580.000865
ORF1ab/nsp31306T1306IaCtaTt1313Q.10.001642
ORF1ab/nsp31306T1306IaCtaTt1212AY.4.20.00026
ORF1ab/nsp31306T1306IaCtaTt1212AY.850.005126
ORF1ab/nsp31306T1306IaCtaTt1212AY.9.10.001005
ORF1ab/nsp31306T1306IaCtaTt1212B.1.258.170.001248
ORF1ab/nsp31306T1306IaCtaTt1111AY.1000.000506
ORF1ab/nsp31306T1306IaCtaTt1111AY.98.10.000533
ORF1ab/nsp31306T1306IaCtaTt1010AY.1180.000626
ORF1ab/nsp31306T1306IaCtaTt1010AY.1210.001353
ORF1ab/nsp31306T1306IaCtaTt1010AY.740.001156
ORF1ab/nsp31306T1306IaCtaTt99AY.230.000628
ORF1ab/nsp31306T1306IaCtaTt99AY.590.004767
ORF1ab/nsp31306T1306IaCtaTt99B.1.2340.001187
ORF1ab/nsp31306T1306IaCtaTt99B.1.5170.003843
ORF1ab/nsp31306T1306IaCtaTt99B.1.617.10.001161
ORF1ab/nsp31306T1306IaCtaTt88AU.20.01937
ORF1ab/nsp31306T1306IaCtaTt88AY.3.10.000682
ORF1ab/nsp31306T1306IaCtaTt88AY.330.000534
ORF1ab/nsp31306T1306IaCtaTt88AY.4.40.003273
ORF1ab/nsp31306T1306IaCtaTt88B.1.1.1530.008762
ORF1ab/nsp31306T1306IaCtaTt88B.1.160.140.016949
ORF1ab/nsp31306T1306IaCtaTt88B.1.360.001167
ORF1ab/nsp31306T1306IaCtaTt88B.1.5960.000697
ORF1ab/nsp31306T1306IaCtaTt88B.1.6210.000708
ORF1ab/nsp31306T1306IaCtaTt77A.23.10.00493
ORF1ab/nsp31306T1306IaCtaTt77AY.1170.000592
ORF1ab/nsp31306T1306IaCtaTt77AY.360.001037
ORF1ab/nsp31306T1306IaCtaTt77AY.750.000392
ORF1ab/nsp31306T1306IaCtaTt77B0.000895
ORF1ab/nsp31306T1306IaCtaTt77B.1.2410.005682
ORF1ab/nsp31306T1306IaCtaTt77B.1.3960.00494
ORF1ab/nsp31306T1306IaCtaTt77B.1.5210.034826
ORF1ab/nsp31306T1306IaCtaTt77B.1.5910.074468
ORF1ab/nsp31306T1306IaCtaTt66AY.1190.000212
ORF1ab/nsp31306T1306IaCtaTt66AY.460.000624
ORF1ab/nsp31306T1306IaCtaTt66AY.90.000406
ORF1ab/nsp31306T1306IaCtaTt66B.1.2100.012793
ORF1ab/nsp31306T1306IaCtaTt66B.1.2220.010152
ORF1ab/nsp31306T1306IaCtaTt66B.1.4080.02214
ORF1ab/nsp31306T1306IaCtaTt66B.1.5650.004862
ORF1ab/nsp31306T1306IaCtaTt66D.20.00045
ORF1ab/nsp31306T1306IaCtaTt66Q.30.00087
ORF1ab/nsp31306T1306IaCtaTt55AY.9.20.000184
ORF1ab/nsp31306T1306IaCtaTt55AY.920.001436
ORF1ab/nsp31306T1306IaCtaTt55B.1.1.3170.002058
ORF1ab/nsp31306T1306IaCtaTt55B.1.177.70.000824
ORF1ab/nsp31306T1306IaCtaTt55B.1.3560.008636
ORF1ab/nsp31306T1306IaCtaTt55B.1.4780.058824
ORF1ab/nsp31306T1306IaCtaTt55B.1.5240.007032
ORF1ab/nsp31306T1306IaCtaTt55P.1.100.001347
ORF1ab/nsp31306T1306IaCtaTt55P.1.170.000809
ORF1ab/nsp31306T1306IaCtaTt55Q.80.000825
ORF1ab/nsp31306T1306IaCtaTt440.222222
ORF1ab/nsp31306T1306IaCtaTt44AY.1200.000149
ORF1ab/nsp31306T1306IaCtaTt44AY.5.30.00135
ORF1ab/nsp31306T1306IaCtaTt44AY.540.000381
ORF1ab/nsp31306T1306IaCtaTt44AY.910.002922
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.280.001245
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.2800.012346
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.3110.001433
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.3710.041667
ORF1ab/nsp31306T1306IaCtaTt44B.1.1060.125
ORF1ab/nsp31306T1306IaCtaTt44B.1.177.580.005326
ORF1ab/nsp31306T1306IaCtaTt44B.1.351.20.00121
ORF1ab/nsp31306T1306IaCtaTt44B.1.3690.001141
ORF1ab/nsp31306T1306IaCtaTt44B.1.415.10.030303
ORF1ab/nsp31306T1306IaCtaTt44B.1.4280.004082
ORF1ab/nsp31306T1306IaCtaTt44C.230.023256
ORF1ab/nsp31306T1306IaCtaTt33A.30.006289
ORF1ab/nsp31306T1306IaCtaTt33AY.1160.00086
ORF1ab/nsp31306T1306IaCtaTt33AY.16.10.00141
ORF1ab/nsp31306T1306IaCtaTt33AY.34.10.00153
ORF1ab/nsp31306T1306IaCtaTt33AY.350.000699
ORF1ab/nsp31306T1306IaCtaTt33AY.46.40.000494
ORF1ab/nsp31306T1306IaCtaTt33AY.5.10.011278
ORF1ab/nsp31306T1306IaCtaTt33AY.530.000863
ORF1ab/nsp31306T1306IaCtaTt33AY.60.000123
ORF1ab/nsp31306T1306IaCtaTt33AY.70.000588
ORF1ab/nsp31306T1306IaCtaTt33AY.700.000626
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.1700.003741
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.1740.010135
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2040.009119
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2100.017143
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2160.002671
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2630.004673
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.3690.001339
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.4090.008499
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.700.001023
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.100.002634
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.350.002073
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.540.001819
ORF1ab/nsp31306T1306IaCtaTt33B.1.2400.000647
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.170.001482
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.290.001552
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.80.003
ORF1ab/nsp31306T1306IaCtaTt33B.1.5250.000339
ORF1ab/nsp31306T1306IaCtaTt33B.1.5610.001191
ORF1ab/nsp31306T1306IaCtaTt33B.1.6090.001438
ORF1ab/nsp31306T1306IaCtaTt33B.1.6280.001057
ORF1ab/nsp31306T1306IaCtaTt33B.30.002492
ORF1ab/nsp31306T1306IaCtaTt33P.1.160.001122
ORF1ab/nsp31306T1306IaCtaTt33R.10.00027
ORF1ab/nsp31306T1306IaCtaTt22A.10.000564
ORF1ab/nsp31306T1306IaCtaTt22AD.20.000438
ORF1ab/nsp31306T1306IaCtaTt22AU.30.004219
ORF1ab/nsp31306T1306IaCtaTt22AY.130.000322
ORF1ab/nsp31306T1306IaCtaTt22AY.240.000862
ORF1ab/nsp31306T1306IaCtaTt22AY.300.000791
ORF1ab/nsp31306T1306IaCtaTt22AY.340.000194
ORF1ab/nsp31306T1306IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31306T1306IaCtaTt22AY.46.10.002053
ORF1ab/nsp31306T1306IaCtaTt22AY.5.40.000553
ORF1ab/nsp31306T1306IaCtaTt22AY.520.001629
ORF1ab/nsp31306T1306IaCtaTt22AY.550.001835
ORF1ab/nsp31306T1306IaCtaTt22AY.7.10.000225
ORF1ab/nsp31306T1306IaCtaTt22AY.75.10.000361
ORF1ab/nsp31306T1306IaCtaTt22AY.840.000875
ORF1ab/nsp31306T1306IaCtaTt22AY.870.001665
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.100.00223
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.2310.006192
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.2940.002532
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.3150.016949
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.3180.000604
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.370.000386
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.4200.002012
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.5130.024691
ORF1ab/nsp31306T1306IaCtaTt22B.1.1260.002551
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.730.001133
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.750.002081
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.860.000367
ORF1ab/nsp31306T1306IaCtaTt22B.1.221.40.008333
ORF1ab/nsp31306T1306IaCtaTt22B.1.3490.00143
ORF1ab/nsp31306T1306IaCtaTt22B.1.3610.002577
ORF1ab/nsp31306T1306IaCtaTt22B.1.3930.057143
ORF1ab/nsp31306T1306IaCtaTt22B.1.438.10.000215
ORF1ab/nsp31306T1306IaCtaTt22B.1.466.20.000782
ORF1ab/nsp31306T1306IaCtaTt22B.1.4740.003802
ORF1ab/nsp31306T1306IaCtaTt22B.1.5380.016129
ORF1ab/nsp31306T1306IaCtaTt22B.1.5580.009132
ORF1ab/nsp31306T1306IaCtaTt22B.1.5750.000607
ORF1ab/nsp31306T1306IaCtaTt22B.400.000729
ORF1ab/nsp31306T1306IaCtaTt22B.460.041667
ORF1ab/nsp31306T1306IaCtaTt22C.40.02
ORF1ab/nsp31306T1306IaCtaTt22P.1.40.001953
ORF1ab/nsp31306T1306IaCtaTt22Q.60.013245
ORF1ab/nsp31306T1306IaCtaTt11A0.000387
ORF1ab/nsp31306T1306IaCtaTt11A.2.40.003367
ORF1ab/nsp31306T1306IaCtaTt11A.2.5.20.001572
ORF1ab/nsp31306T1306IaCtaTt11A.50.001923
ORF1ab/nsp31306T1306IaCtaTt11A.60.005128
ORF1ab/nsp31306T1306IaCtaTt11AH.30.003802
ORF1ab/nsp31306T1306IaCtaTt11AT.10.005128
ORF1ab/nsp31306T1306IaCtaTt11AY.1040.001984
ORF1ab/nsp31306T1306IaCtaTt11AY.1060.000335
ORF1ab/nsp31306T1306IaCtaTt11AY.1100.000113
ORF1ab/nsp31306T1306IaCtaTt11AY.1140.000231
ORF1ab/nsp31306T1306IaCtaTt11AY.1150.005208
ORF1ab/nsp31306T1306IaCtaTt11AY.120.000316
ORF1ab/nsp31306T1306IaCtaTt11AY.120.10.000321
ORF1ab/nsp31306T1306IaCtaTt11AY.160.00038
ORF1ab/nsp31306T1306IaCtaTt11AY.20.000356
ORF1ab/nsp31306T1306IaCtaTt11AY.4.50.000107
ORF1ab/nsp31306T1306IaCtaTt11AY.46.50.000198
ORF1ab/nsp31306T1306IaCtaTt11AY.46.60.000072
ORF1ab/nsp31306T1306IaCtaTt11AY.480.000465
ORF1ab/nsp31306T1306IaCtaTt11AY.570.000656
ORF1ab/nsp31306T1306IaCtaTt11AY.650.000533
ORF1ab/nsp31306T1306IaCtaTt11AY.660.00107
ORF1ab/nsp31306T1306IaCtaTt11AY.680.000274
ORF1ab/nsp31306T1306IaCtaTt11AY.720.001361
ORF1ab/nsp31306T1306IaCtaTt11AY.80.000606
ORF1ab/nsp31306T1306IaCtaTt11AY.800.001129
ORF1ab/nsp31306T1306IaCtaTt11AY.880.000884
ORF1ab/nsp31306T1306IaCtaTt11AY.950.000761
ORF1ab/nsp31306T1306IaCtaTt11AY.970.001701
ORF1ab/nsp31306T1306IaCtaTt11AY.980.000079
ORF1ab/nsp31306T1306IaCtaTt11AY.99.20.000092
ORF1ab/nsp31306T1306IaCtaTt11AZ.30.00152
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.10.000327
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.1370.0125
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2370.005405
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.250.000569
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2860.002899
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2910.000742
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3230.014085
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3440.010753
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3510.002793
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3590.027778
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.480.002874
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.5060.037037
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.570.011494
ORF1ab/nsp31306T1306IaCtaTt11B.1.1030.019231
ORF1ab/nsp31306T1306IaCtaTt11B.1.1190.010526
ORF1ab/nsp31306T1306IaCtaTt11B.1.1420.002899
ORF1ab/nsp31306T1306IaCtaTt11B.1.1470.000756
ORF1ab/nsp31306T1306IaCtaTt11B.1.1650.011905
ORF1ab/nsp31306T1306IaCtaTt11B.1.1700.00431
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.210.000076
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.410.0025
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.500.004695
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.690.001484
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.790.002342
ORF1ab/nsp31306T1306IaCtaTt11B.1.214.20.0006
ORF1ab/nsp31306T1306IaCtaTt11B.1.2200.01087
ORF1ab/nsp31306T1306IaCtaTt11B.1.230.006061
ORF1ab/nsp31306T1306IaCtaTt11B.1.2320.000537
ORF1ab/nsp31306T1306IaCtaTt11B.1.258.140.00098
ORF1ab/nsp31306T1306IaCtaTt11B.1.2650.001271
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ORF1ab/nsp31306T1306IaCtaTt11B.1.351.30.000876
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ORF1ab/nsp31306T1306IaCtaTt11B.1.36.310.001751
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ORF1ab/nsp31306T1306IaCtaTt11C.160.00106
ORF1ab/nsp31306T1306IaCtaTt11C.350.000774
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ORF1ab/nsp31306T1306IaCtaTt11C.36.20.034483
ORF1ab/nsp31306T1306IaCtaTt11C.36.30.000567
ORF1ab/nsp31306T1306IaCtaTt11N.50.001767
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ORF1ab/nsp31306T1306IaCtaTt11Z.10.00289