CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1306A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31306T1306AT2124AnonsynActGct45440.9777786635-6637
ORF1ab/nsp31306T1306AT2124AnonsynAcTGcC4510.02222226635-6637

Details of the mutation T1306A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31306T1306AActGct4445All0.000008
ORF1ab/nsp31306T1306AAcTGcC145All0
ORF1ab/nsp31306T1306AActGct1010B.1.3110.002746
ORF1ab/nsp31306T1306AActGct66B.1.1.70.000005
ORF1ab/nsp31306T1306AActGct44B.10.000037
ORF1ab/nsp31306T1306AActGct33B.1.1.2140.000166
ORF1ab/nsp31306T1306AAcTGcC120.055556
ORF1ab/nsp31306T1306AActGct120.055556
ORF1ab/nsp31306T1306AActGct22AY.440.000012
ORF1ab/nsp31306T1306AActGct11AY.1020.000027
ORF1ab/nsp31306T1306AActGct11AY.1030.000006
ORF1ab/nsp31306T1306AActGct11AY.23.10.000417
ORF1ab/nsp31306T1306AActGct11AY.250.000006
ORF1ab/nsp31306T1306AActGct11AY.46.40.000165
ORF1ab/nsp31306T1306AActGct11AY.50.000021
ORF1ab/nsp31306T1306AActGct11AY.690.000187
ORF1ab/nsp31306T1306AActGct11AY.980.000079
ORF1ab/nsp31306T1306AActGct11B.1.10.000018
ORF1ab/nsp31306T1306AActGct11B.1.1.3540.004386
ORF1ab/nsp31306T1306AActGct11B.1.1990.004132
ORF1ab/nsp31306T1306AActGct11B.1.3510.00003
ORF1ab/nsp31306T1306AActGct11B.1.4000.000429
ORF1ab/nsp31306T1306AActGct11B.1.5760.000907
ORF1ab/nsp31306T1306AActGct11B.1.5960.000087
ORF1ab/nsp31306T1306AActGct11B.1.617.10.000129
ORF1ab/nsp31306T1306AActGct11B.1.617.20.000004
ORF1ab/nsp31306T1306AActGct11D.20.000075