CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1303T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31303T1303TT2121TsynacCacT479446590.971846626-6628
ORF1ab/nsp31303T1303TT2121TsynacCacA47941130.02357116626-6628
ORF1ab/nsp31303T1303TT2121TsynacCacG4794220.004589076626-6628

Details of the mutation T1303T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31303T1303TacCacT46594794All0.000891
ORF1ab/nsp31303T1303TacCacA1134794All0.000022
ORF1ab/nsp31303T1303TacCacG224794All0.000004
ORF1ab/nsp31303T1303TacCacT10881095B.1.1.70.000974
ORF1ab/nsp31303T1303TacCacA61095B.1.1.70.000005
ORF1ab/nsp31303T1303TacCacG11095B.1.1.70.000001
ORF1ab/nsp31303T1303TacCacT914949AY.40.001423
ORF1ab/nsp31303T1303TacCacG18949AY.40.000028
ORF1ab/nsp31303T1303TacCacA17949AY.40.000026
ORF1ab/nsp31303T1303TacCacT225227B.1.1.5190.008935
ORF1ab/nsp31303T1303TacCacA2227B.1.1.5190.000079
ORF1ab/nsp31303T1303TacCacT187187AV.10.944444
ORF1ab/nsp31303T1303TacCacT179183B.1.617.20.000674
ORF1ab/nsp31303T1303TacCacG2183B.1.617.20.000008
ORF1ab/nsp31303T1303TacCacA2183B.1.617.20.000008
ORF1ab/nsp31303T1303TacCacT159159B.1.1600.004959
ORF1ab/nsp31303T1303TacCacT113113P.10.00178
ORF1ab/nsp31303T1303TacCacT107107AY.1200.003978
ORF1ab/nsp31303T1303TacCacT8787AY.430.000385
ORF1ab/nsp31303T1303TacCacT8686AY.250.000517
ORF1ab/nsp31303T1303TacCacT7177B.1.10.001288
ORF1ab/nsp31303T1303TacCacA677B.1.10.000109
ORF1ab/nsp31303T1303TacCacT5972AY.440.000359
ORF1ab/nsp31303T1303TacCacA1272AY.440.000073
ORF1ab/nsp31303T1303TacCacG172AY.440.000006
ORF1ab/nsp31303T1303TacCacT6471B.10.000586
ORF1ab/nsp31303T1303TacCacA771B.10.000064
ORF1ab/nsp31303T1303TacCacT4964B.1.20.000431
ORF1ab/nsp31303T1303TacCacA1564B.1.20.000132
ORF1ab/nsp31303T1303TacCacT5252B.1.3510.001546
ORF1ab/nsp31303T1303TacCacT4344AY.1030.000267
ORF1ab/nsp31303T1303TacCacA144AY.1030.000006
ORF1ab/nsp31303T1303TacCacT4242AY.50.000867
ORF1ab/nsp31303T1303TacCacT2539AY.390.000618
ORF1ab/nsp31303T1303TacCacA1439AY.390.000346
ORF1ab/nsp31303T1303TacCacT3838AY.230.00265
ORF1ab/nsp31303T1303TacCacT2635AY.30.000259
ORF1ab/nsp31303T1303TacCacA935AY.30.00009
ORF1ab/nsp31303T1303TacCacT3535B.1.5960.00305
ORF1ab/nsp31303T1303TacCacT3131B.1.6190.027003
ORF1ab/nsp31303T1303TacCacT3030AY.1020.000795
ORF1ab/nsp31303T1303TacCacT2930B.1.1770.000382
ORF1ab/nsp31303T1303TacCacA130B.1.1770.000013
ORF1ab/nsp31303T1303TacCacT2830B.1.4290.000659
ORF1ab/nsp31303T1303TacCacA230B.1.4290.000047
ORF1ab/nsp31303T1303TacCacT2929B.1.3770.13242
ORF1ab/nsp31303T1303TacCacT2828AY.260.000793
ORF1ab/nsp31303T1303TacCacT2828B.1.177.520.049209
ORF1ab/nsp31303T1303TacCacT2424AY.1210.003248
ORF1ab/nsp31303T1303TacCacT2424B.1.258.170.002495
ORF1ab/nsp31303T1303TacCacT2222B.1.360.00321
ORF1ab/nsp31303T1303TacCacT1818AY.420.000724
ORF1ab/nsp31303T1303TacCacT1118B.1.2430.000765
ORF1ab/nsp31303T1303TacCacA718B.1.2430.000487
ORF1ab/nsp31303T1303TacCacT1717A.2.5.10.081731
ORF1ab/nsp31303T1303TacCacT1717AY.750.000952
ORF1ab/nsp31303T1303TacCacT1616B.1.1.2650.050473
ORF1ab/nsp31303T1303TacCacT1616B.1.2580.001065
ORF1ab/nsp31303T1303TacCacT1616Q.20.009816
ORF1ab/nsp31303T1303TacCacT1616Q.80.002639
ORF1ab/nsp31303T1303TacCacT1515B.1.1.3170.006175
ORF1ab/nsp31303T1303TacCacT1515B.1.3960.010586
ORF1ab/nsp31303T1303TacCacT1515B.1.5260.000353
ORF1ab/nsp31303T1303TacCacT1414AY.1000.000644
ORF1ab/nsp31303T1303TacCacT1414AY.340.001358
ORF1ab/nsp31303T1303TacCacT1414B.1.4800.034826
ORF1ab/nsp31303T1303TacCacT1313AY.290.000205
ORF1ab/nsp31303T1303TacCacT1212AY.1190.000424
ORF1ab/nsp31303T1303TacCacT1212AY.880.01061
ORF1ab/nsp31303T1303TacCacT1212B.1.2340.001583
ORF1ab/nsp31303T1303TacCacT1111AY.4.2.10.001639
ORF1ab/nsp31303T1303TacCacT1111B.1.1.1471
ORF1ab/nsp31303T1303TacCacT911B.1.4280.009184
ORF1ab/nsp31303T1303TacCacA211B.1.4280.002041
ORF1ab/nsp31303T1303TacCacT1010B.1.1260.012755
ORF1ab/nsp31303T1303TacCacT1010B.1.438.10.001073
ORF1ab/nsp31303T1303TacCacT1010C.370.001161
ORF1ab/nsp31303T1303TacCacT99AY.450.001095
ORF1ab/nsp31303T1303TacCacT99B.1.619.10.005773
ORF1ab/nsp31303T1303TacCacT88AY.1130.001139
ORF1ab/nsp31303T1303TacCacT88AY.4.20.000174
ORF1ab/nsp31303T1303TacCacT88B.1.5800.03252
ORF1ab/nsp31303T1303TacCacT77AY.470.000218
ORF1ab/nsp31303T1303TacCacT77AY.490.022364
ORF1ab/nsp31303T1303TacCacT77B.1.1.280.002179
ORF1ab/nsp31303T1303TacCacT77B.1.1.5210.037433
ORF1ab/nsp31303T1303TacCacT77B.1.6020.045752
ORF1ab/nsp31303T1303TacCacT77P.20.001306
ORF1ab/nsp31303T1303TacCacT66AY.200.000233
ORF1ab/nsp31303T1303TacCacT66AY.530.001725
ORF1ab/nsp31303T1303TacCacT66AY.9.20.00022
ORF1ab/nsp31303T1303TacCacT66AY.98.10.000291
ORF1ab/nsp31303T1303TacCacT66B.1.177.80.004515
ORF1ab/nsp31303T1303TacCacT66B.1.2400.001293
ORF1ab/nsp31303T1303TacCacT66B.1.4000.002574
ORF1ab/nsp31303T1303TacCacT66B.1.4970.001889
ORF1ab/nsp31303T1303TacCacT55AY.1170.000423
ORF1ab/nsp31303T1303TacCacT55AY.39.10.000198
ORF1ab/nsp31303T1303TacCacT55AY.70.00098
ORF1ab/nsp31303T1303TacCacT55AY.7.20.002796
ORF1ab/nsp31303T1303TacCacT55AY.850.002136
ORF1ab/nsp31303T1303TacCacT55AY.930.001365
ORF1ab/nsp31303T1303TacCacT55B.1.1.2840.000537
ORF1ab/nsp31303T1303TacCacT55B.1.177.820.002387
ORF1ab/nsp31303T1303TacCacT55C.380.040323
ORF1ab/nsp31303T1303TacCacT44AY.330.000267
ORF1ab/nsp31303T1303TacCacT44AY.610.000419
ORF1ab/nsp31303T1303TacCacA44AY.80.002424
ORF1ab/nsp31303T1303TacCacT44B.1.1.1740.013514
ORF1ab/nsp31303T1303TacCacT44B.1.1.3000.043011
ORF1ab/nsp31303T1303TacCacT44B.1.1.3060.001754
ORF1ab/nsp31303T1303TacCacT44B.1.2210.000284
ORF1ab/nsp31303T1303TacCacT44B.1.36.180.001681
ORF1ab/nsp31303T1303TacCacT44B.1.6050.02381
ORF1ab/nsp31303T1303TacCacT44B.1.6090.001918
ORF1ab/nsp31303T1303TacCacT44B.1.6180.016129
ORF1ab/nsp31303T1303TacCacT44B.1.6210.000354
ORF1ab/nsp31303T1303TacCacT44P.1.120.001936
ORF1ab/nsp31303T1303TacCacT34P.1.70.000958
ORF1ab/nsp31303T1303TacCacA14P.1.70.000319
ORF1ab/nsp31303T1303TacCacT33A.2.50.001497
ORF1ab/nsp31303T1303TacCacT33AY.380.001498
ORF1ab/nsp31303T1303TacCacT33AY.60.000123
ORF1ab/nsp31303T1303TacCacT33AY.75.10.000541
ORF1ab/nsp31303T1303TacCacT33AY.9.10.000251
ORF1ab/nsp31303T1303TacCacT33AY.980.000237
ORF1ab/nsp31303T1303TacCacT33B.1.1.10.00098
ORF1ab/nsp31303T1303TacCacT33B.1.177.600.000655
ORF1ab/nsp31303T1303TacCacT33B.1.36.350.007812
ORF1ab/nsp31303T1303TacCacT33B.1.3690.000856
ORF1ab/nsp31303T1303TacCacT33B.1.4110.011111
ORF1ab/nsp31303T1303TacCacT33B.1.4270.000151
ORF1ab/nsp31303T1303TacCacT33P.1.10.20.125
ORF1ab/nsp31303T1303TacCacT22AY.1180.000125
ORF1ab/nsp31303T1303TacCacT22AY.270.000129
ORF1ab/nsp31303T1303TacCacT22AY.350.000466
ORF1ab/nsp31303T1303TacCacT22AY.370.000632
ORF1ab/nsp31303T1303TacCacT22AY.4.50.000215
ORF1ab/nsp31303T1303TacCacT22AY.5.30.000675
ORF1ab/nsp31303T1303TacCacT22AY.520.001629
ORF1ab/nsp31303T1303TacCacT22AY.590.001059
ORF1ab/nsp31303T1303TacCacT22AY.630.000774
ORF1ab/nsp31303T1303TacCacT22B.1.1.2220.000408
ORF1ab/nsp31303T1303TacCacT22B.1.1.2790.002242
ORF1ab/nsp31303T1303TacCacT22B.1.1.3030.005525
ORF1ab/nsp31303T1303TacCacT22B.1.1.3180.000604
ORF1ab/nsp31303T1303TacCacT22B.1.1.330.000842
ORF1ab/nsp31303T1303TacCacT22B.1.1.3720.001377
ORF1ab/nsp31303T1303TacCacT22B.1.1.4320.002532
ORF1ab/nsp31303T1303TacCacT22B.1.1.630.000772
ORF1ab/nsp31303T1303TacCacT22B.1.1.700.000682
ORF1ab/nsp31303T1303TacCacT22B.1.160.260.004843
ORF1ab/nsp31303T1303TacCacT22B.1.177.70.00033
ORF1ab/nsp31303T1303TacCacT22B.1.36.220.002415
ORF1ab/nsp31303T1303TacCacT22B.1.36.290.001035
ORF1ab/nsp31303T1303TacCacT22B.1.3990.003868
ORF1ab/nsp31303T1303TacCacT22B.1.4200.020833
ORF1ab/nsp31303T1303TacCacA22B.1.4990.002101
ORF1ab/nsp31303T1303TacCacT22B.1.5090.001732
ORF1ab/nsp31303T1303TacCacT22B.1.5510.002581
ORF1ab/nsp31303T1303TacCacT22B.1.617.10.000258
ORF1ab/nsp31303T1303TacCacT22B.1.6280.000705
ORF1ab/nsp31303T1303TacCacT22P.1.140.000096
ORF1ab/nsp31303T1303TacCacT22P.1.150.000465
ORF1ab/nsp31303T1303TacCacT110.055556
ORF1ab/nsp31303T1303TacCacT11A0.000387
ORF1ab/nsp31303T1303TacCacT11AE.80.000489
ORF1ab/nsp31303T1303TacCacT11AY.1100.000113
ORF1ab/nsp31303T1303TacCacT11AY.1140.000231
ORF1ab/nsp31303T1303TacCacT11AY.1160.000287
ORF1ab/nsp31303T1303TacCacT11AY.130.000161
ORF1ab/nsp31303T1303TacCacT11AY.160.00038
ORF1ab/nsp31303T1303TacCacT11AY.16.10.00047
ORF1ab/nsp31303T1303TacCacA11AY.23.10.000417
ORF1ab/nsp31303T1303TacCacT11AY.3.10.000085
ORF1ab/nsp31303T1303TacCacT11AY.320.000532
ORF1ab/nsp31303T1303TacCacT11AY.34.10.00051
ORF1ab/nsp31303T1303TacCacT11AY.360.000148
ORF1ab/nsp31303T1303TacCacT11AY.400.000964
ORF1ab/nsp31303T1303TacCacT11AY.460.000104
ORF1ab/nsp31303T1303TacCacT11AY.46.20.000635
ORF1ab/nsp31303T1303TacCacT11AY.46.30.000934
ORF1ab/nsp31303T1303TacCacT11AY.540.000095
ORF1ab/nsp31303T1303TacCacT11AY.560.001605
ORF1ab/nsp31303T1303TacCacT11AY.660.00107
ORF1ab/nsp31303T1303TacCacT11AY.690.000187
ORF1ab/nsp31303T1303TacCacT11AY.7.10.000113
ORF1ab/nsp31303T1303TacCacT11AY.700.000209
ORF1ab/nsp31303T1303TacCacT11AY.740.000116
ORF1ab/nsp31303T1303TacCacT11AY.860.00083
ORF1ab/nsp31303T1303TacCacT11AY.9.2.10.001976
ORF1ab/nsp31303T1303TacCacT11AY.900.000684
ORF1ab/nsp31303T1303TacCacT11AY.960.002075
ORF1ab/nsp31303T1303TacCacT11AZ.10.000867
ORF1ab/nsp31303T1303TacCacT11B0.000128
ORF1ab/nsp31303T1303TacCacT11B.1.1.100.001115
ORF1ab/nsp31303T1303TacCacT11B.1.1.1410.002012
ORF1ab/nsp31303T1303TacCacT11B.1.1.1610.003534
ORF1ab/nsp31303T1303TacCacT11B.1.1.1710.003676
ORF1ab/nsp31303T1303TacCacT11B.1.1.1870.00885
ORF1ab/nsp31303T1303TacCacA11B.1.1.2160.00089
ORF1ab/nsp31303T1303TacCacT11B.1.1.2670.010101
ORF1ab/nsp31303T1303TacCacT11B.1.1.2750.011236
ORF1ab/nsp31303T1303TacCacT11B.1.1.3070.002532
ORF1ab/nsp31303T1303TacCacT11B.1.1.3540.004386
ORF1ab/nsp31303T1303TacCacT11B.1.1.3680.003086
ORF1ab/nsp31303T1303TacCacT11B.1.1.370.000193
ORF1ab/nsp31303T1303TacCacT11B.1.1.390.00051
ORF1ab/nsp31303T1303TacCacT11B.1.1.950.019608
ORF1ab/nsp31303T1303TacCacT11B.1.1080.005814
ORF1ab/nsp31303T1303TacCacT11B.1.1280.000635
ORF1ab/nsp31303T1303TacCacT11B.1.1310.008772
ORF1ab/nsp31303T1303TacCacT11B.1.160.150.00495
ORF1ab/nsp31303T1303TacCacT11B.1.160.300.002976
ORF1ab/nsp31303T1303TacCacT11B.1.177.160.000664
ORF1ab/nsp31303T1303TacCacT11B.1.177.210.000076
ORF1ab/nsp31303T1303TacCacT11B.1.177.300.002513
ORF1ab/nsp31303T1303TacCacT11B.1.177.560.000668
ORF1ab/nsp31303T1303TacCacT11B.1.177.570.000281
ORF1ab/nsp31303T1303TacCacT11B.1.177.730.000566
ORF1ab/nsp31303T1303TacCacT11B.1.177.810.000189
ORF1ab/nsp31303T1303TacCacT11B.1.1900.01
ORF1ab/nsp31303T1303TacCacT11B.1.2100.002132
ORF1ab/nsp31303T1303TacCacT11B.1.2180.005155
ORF1ab/nsp31303T1303TacCacA11B.1.2230.002778
ORF1ab/nsp31303T1303TacCacT11B.1.2250.015385
ORF1ab/nsp31303T1303TacCacT11B.1.3110.000275
ORF1ab/nsp31303T1303TacCacT11B.1.3360.002439
ORF1ab/nsp31303T1303TacCacT11B.1.350.008475
ORF1ab/nsp31303T1303TacCacT11B.1.3600.012658
ORF1ab/nsp31303T1303TacCacT11B.1.3810.007812
ORF1ab/nsp31303T1303TacCacT11B.1.390.003906
ORF1ab/nsp31303T1303TacCacT11B.1.4250.002994
ORF1ab/nsp31303T1303TacCacT11B.1.4380.006536
ORF1ab/nsp31303T1303TacCacT11B.1.466.20.000391
ORF1ab/nsp31303T1303TacCacT11B.1.4680.005714
ORF1ab/nsp31303T1303TacCacT11B.1.5170.000427
ORF1ab/nsp31303T1303TacCacT11B.1.5700.002941
ORF1ab/nsp31303T1303TacCacT11B.1.575.10.002439
ORF1ab/nsp31303T1303TacCacT11B.1.5820.000491
ORF1ab/nsp31303T1303TacCacT11B.1.5950.000261
ORF1ab/nsp31303T1303TacCacT11B.1.596.10.009346
ORF1ab/nsp31303T1303TacCacT11B.1.5990.00365
ORF1ab/nsp31303T1303TacCacT11B.1.6370.000073
ORF1ab/nsp31303T1303TacCacT11B.1.760.011364
ORF1ab/nsp31303T1303TacCacT11B.1.9.50.005682
ORF1ab/nsp31303T1303TacCacT11B.30.000831
ORF1ab/nsp31303T1303TacCacT11B.400.000364
ORF1ab/nsp31303T1303TacCacT11C.190.027027
ORF1ab/nsp31303T1303TacCacT11C.36.3.10.002717
ORF1ab/nsp31303T1303TacCacT11D.20.000075
ORF1ab/nsp31303T1303TacCacT11P.1.100.000269
ORF1ab/nsp31303T1303TacCacT11Q.10.000126