CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1288S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31288T1288ST2106SnonsynaCtaGt1121030.9196436581-6583
ORF1ab/nsp31288T1288ST2106SnonsynActTct11260.05357146581-6583
ORF1ab/nsp31288T1288ST2106SnonsynaCTaGC11220.01785716581-6583
ORF1ab/nsp31288T1288ST2106SnonsynAcTTcC11210.008928576581-6583

Details of the mutation T1288S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31288T1288SaCtaGt103112All0.00002
ORF1ab/nsp31288T1288SActTct6112All0.000001
ORF1ab/nsp31288T1288SaCTaGC2112All0
ORF1ab/nsp31288T1288SAcTTcC1112All0
ORF1ab/nsp31288T1288SaCtaGt100101AY.30.000995
ORF1ab/nsp31288T1288SActTct1101AY.30.00001
ORF1ab/nsp31288T1288SaCTaGC240.111111
ORF1ab/nsp31288T1288SAcTTcC140.055556
ORF1ab/nsp31288T1288SActTct140.055556
ORF1ab/nsp31288T1288SaCtaGt11AY.1190.000035
ORF1ab/nsp31288T1288SaCtaGt11B.1.10.000018
ORF1ab/nsp31288T1288SActTct11B.1.1.2570.009709
ORF1ab/nsp31288T1288SActTct11B.1.1.630.000386
ORF1ab/nsp31288T1288SActTct11B.1.1.70.000001
ORF1ab/nsp31288T1288SActTct11B.1.1600.000031
ORF1ab/nsp31288T1288SaCtaGt11B.1.617.20.000004