CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1269I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31269T1269IT2087InonsynaCaaTa816881650.9996336524-6526
ORF1ab/nsp31269T1269IT2087InonsynaCAaTT816830.0003672876524-6526

Details of the mutation T1269I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31269T1269IaCaaTa81658168All0.001562
ORF1ab/nsp31269T1269IaCAaTT38168All0.000001
ORF1ab/nsp31269T1269IaCaaTa13271327B.1.1.70.001188
ORF1ab/nsp31269T1269IaCaaTa985985B.1.6370.071977
ORF1ab/nsp31269T1269IaCaaTa808808AY.40.001258
ORF1ab/nsp31269T1269IaCaaTa762764B.1.20.00671
ORF1ab/nsp31269T1269IaCAaTT2764B.1.20.000018
ORF1ab/nsp31269T1269IaCaaTa343343B.1.221.10.997093
ORF1ab/nsp31269T1269IaCaaTa320320B.1.617.20.001205
ORF1ab/nsp31269T1269IaCaaTa310310AY.4.20.006723
ORF1ab/nsp31269T1269IaCaaTa219220AY.440.001333
ORF1ab/nsp31269T1269IaCAaTT1220AY.440.000006
ORF1ab/nsp31269T1269IaCaaTa183183AY.250.001101
ORF1ab/nsp31269T1269IaCaaTa136136AY.430.000603
ORF1ab/nsp31269T1269IaCaaTa123123B.10.001127
ORF1ab/nsp31269T1269IaCaaTa114114AY.1030.000708
ORF1ab/nsp31269T1269IaCaaTa108108AY.200.004197
ORF1ab/nsp31269T1269IaCaaTa108108AY.30.001074
ORF1ab/nsp31269T1269IaCaaTa9191AY.470.002831
ORF1ab/nsp31269T1269IaCaaTa9090B.1.1.2140.004991
ORF1ab/nsp31269T1269IaCaaTa8484AY.9.20.003085
ORF1ab/nsp31269T1269IaCaaTa8484B.1.1600.00262
ORF1ab/nsp31269T1269IaCaaTa8282B.1.1770.00108
ORF1ab/nsp31269T1269IaCaaTa7676AY.1000.003497
ORF1ab/nsp31269T1269IaCaaTa7575AY.3.10.006394
ORF1ab/nsp31269T1269IaCaaTa7474B.1.3510.0022
ORF1ab/nsp31269T1269IaCaaTa7171P.10.001119
ORF1ab/nsp31269T1269IaCaaTa6262AY.260.001755
ORF1ab/nsp31269T1269IaCaaTa5454AY.1020.001432
ORF1ab/nsp31269T1269IaCaaTa5252B.1.10.000943
ORF1ab/nsp31269T1269IaCaaTa5050B.1.2210.003552
ORF1ab/nsp31269T1269IaCaaTa4949B.1.3110.013454
ORF1ab/nsp31269T1269IaCaaTa4646AY.1200.00171
ORF1ab/nsp31269T1269IaCaaTa3737B.1.4290.000871
ORF1ab/nsp31269T1269IaCaaTa3737B.1.6030.393617
ORF1ab/nsp31269T1269IaCaaTa3434B.1.258.170.003535
ORF1ab/nsp31269T1269IaCaaTa3333AZ.20.027094
ORF1ab/nsp31269T1269IaCaaTa3333B.1.2430.002296
ORF1ab/nsp31269T1269IaCaaTa3030AY.390.000741
ORF1ab/nsp31269T1269IaCaaTa2929B.1.1.630.011188
ORF1ab/nsp31269T1269IaCaaTa2828B.1.1.5190.001112
ORF1ab/nsp31269T1269IaCaaTa2626B.1.1.280.008092
ORF1ab/nsp31269T1269IaCaaTa2424AY.10.009497
ORF1ab/nsp31269T1269IaCaaTa2424B.1.177.750.024974
ORF1ab/nsp31269T1269IaCaaTa2424P.1.140.001147
ORF1ab/nsp31269T1269IaCaaTa2222B.1.360.00321
ORF1ab/nsp31269T1269IaCaaTa2121AY.50.000434
ORF1ab/nsp31269T1269IaCaaTa2121AY.540.002002
ORF1ab/nsp31269T1269IaCaaTa2121B.1.1.3320.65625
ORF1ab/nsp31269T1269IaCaaTa2121B.1.5260.000494
ORF1ab/nsp31269T1269IaCaaTa2020B.1.6360.134228
ORF1ab/nsp31269T1269IaCaaTa2020C.370.002321
ORF1ab/nsp31269T1269IaCaaTa1818Q.10.002274
ORF1ab/nsp31269T1269IaCaaTa1717AY.60.000699
ORF1ab/nsp31269T1269IaCaaTa1717AY.980.001343
ORF1ab/nsp31269T1269IaCaaTa1616AY.120.20.020566
ORF1ab/nsp31269T1269IaCaaTa1616B.1.5750.004854
ORF1ab/nsp31269T1269IaCaaTa1515AY.420.000603
ORF1ab/nsp31269T1269IaCaaTa1515B.1.4270.000757
ORF1ab/nsp31269T1269IaCaaTa1313AY.900.008898
ORF1ab/nsp31269T1269IaCaaTa1313B.1.177.810.002461
ORF1ab/nsp31269T1269IaCaaTa1212AY.450.00146
ORF1ab/nsp31269T1269IaCaaTa1212AY.5.40.00332
ORF1ab/nsp31269T1269IaCaaTa1212B.1.3690.003423
ORF1ab/nsp31269T1269IaCaaTa1111AY.230.000767
ORF1ab/nsp31269T1269IaCaaTa1111B.1.177.770.007988
ORF1ab/nsp31269T1269IaCaaTa1010AY.270.000647
ORF1ab/nsp31269T1269IaCaaTa1010AY.99.20.000922
ORF1ab/nsp31269T1269IaCaaTa1010B.1.1280.006353
ORF1ab/nsp31269T1269IaCaaTa1010B.1.160.140.021186
ORF1ab/nsp31269T1269IaCaaTa1010B.1.4330.031949
ORF1ab/nsp31269T1269IaCaaTa1010B.1.5960.000871
ORF1ab/nsp31269T1269IaCaaTa1010P.1.120.00484
ORF1ab/nsp31269T1269IaCaaTa99AY.4.50.000967
ORF1ab/nsp31269T1269IaCaaTa99AY.820.012212
ORF1ab/nsp31269T1269IaCaaTa99AY.9.10.000754
ORF1ab/nsp31269T1269IaCaaTa99B.1.2410.007305
ORF1ab/nsp31269T1269IaCaaTa99B.1.36.170.004447
ORF1ab/nsp31269T1269IaCaaTa99B.1.5250.001018
ORF1ab/nsp31269T1269IaCaaTa88AY.1190.000282
ORF1ab/nsp31269T1269IaCaaTa88AY.290.000126
ORF1ab/nsp31269T1269IaCaaTa88AY.90.000541
ORF1ab/nsp31269T1269IaCaaTa88B.1.1.2220.001632
ORF1ab/nsp31269T1269IaCaaTa88B.1.1.370.001543
ORF1ab/nsp31269T1269IaCaaTa88B.1.5490.057554
ORF1ab/nsp31269T1269IaCaaTa88P.1.10.002541
ORF1ab/nsp31269T1269IaCaaTa77AY.770.007892
ORF1ab/nsp31269T1269IaCaaTa77B.1.177.600.001529
ORF1ab/nsp31269T1269IaCaaTa77B.1.4280.007143
ORF1ab/nsp31269T1269IaCaaTa77P.1.70.002235
ORF1ab/nsp31269T1269IaCaaTa77P.60.022013
ORF1ab/nsp31269T1269IaCaaTa66AY.98.10.000291
ORF1ab/nsp31269T1269IaCaaTa66B.1.1.1700.007481
ORF1ab/nsp31269T1269IaCaaTa66B.1.1.1940.029703
ORF1ab/nsp31269T1269IaCaaTa66B.1.214.20.003597
ORF1ab/nsp31269T1269IaCaaTa66B.1.36.290.003104
ORF1ab/nsp31269T1269IaCaaTa55A0.001935
ORF1ab/nsp31269T1269IaCaaTa55AY.360.000741
ORF1ab/nsp31269T1269IaCaaTa55AY.380.002496
ORF1ab/nsp31269T1269IaCaaTa55AY.39.10.000198
ORF1ab/nsp31269T1269IaCaaTa55AY.460.00052
ORF1ab/nsp31269T1269IaCaaTa55AY.710.002375
ORF1ab/nsp31269T1269IaCaaTa55B.1.36.80.005
ORF1ab/nsp31269T1269IaCaaTa55C.36.20.172414
ORF1ab/nsp31269T1269IaCaaTa55D.20.000375
ORF1ab/nsp31269T1269IaCaaTa44AY.1210.000541
ORF1ab/nsp31269T1269IaCaaTa44AY.46.60.000289
ORF1ab/nsp31269T1269IaCaaTa44AY.610.000419
ORF1ab/nsp31269T1269IaCaaTa44AY.750.000224
ORF1ab/nsp31269T1269IaCaaTa44B0.000511
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.2630.006231
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.390.002039
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.700.001364
ORF1ab/nsp31269T1269IaCaaTa44B.1.160.280.011696
ORF1ab/nsp31269T1269IaCaaTa44B.1.2580.000266
ORF1ab/nsp31269T1269IaCaaTa44B.1.258.110.001585
ORF1ab/nsp31269T1269IaCaaTa44B.1.4700.005618
ORF1ab/nsp31269T1269IaCaaTa44B.1.617.10.000516
ORF1ab/nsp31269T1269IaCaaTa44B.1.6210.000354
ORF1ab/nsp31269T1269IaCaaTa44P.1.170.000647
ORF1ab/nsp31269T1269IaCaaTa44Q.40.001819
ORF1ab/nsp31269T1269IaCaaTa33AY.1080.003308
ORF1ab/nsp31269T1269IaCaaTa33AY.240.001293
ORF1ab/nsp31269T1269IaCaaTa33AY.330.0002
ORF1ab/nsp31269T1269IaCaaTa33AY.340.000291
ORF1ab/nsp31269T1269IaCaaTa33AY.46.20.001906
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.10.00098
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.250.001706
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.2910.002227
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.3180.000905
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.330.001263
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.3540.013158
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.4480.006098
ORF1ab/nsp31269T1269IaCaaTa33B.1.1110.003525
ORF1ab/nsp31269T1269IaCaaTa33B.1.1950.015075
ORF1ab/nsp31269T1269IaCaaTa33B.1.2390.003663
ORF1ab/nsp31269T1269IaCaaTa33B.1.36.380.004926
ORF1ab/nsp31269T1269IaCaaTa33B.1.4740.005703
ORF1ab/nsp31269T1269IaCaaTa33B.1.4970.000944
ORF1ab/nsp31269T1269IaCaaTa33B.1.564.10.004732
ORF1ab/nsp31269T1269IaCaaTa33B.1.6230.001609
ORF1ab/nsp31269T1269IaCaaTa33Q.80.000495
ORF1ab/nsp31269T1269IaCaaTa33R.10.00027
ORF1ab/nsp31269T1269IaCaaTa22A.10.000564
ORF1ab/nsp31269T1269IaCaaTa22AY.1060.00067
ORF1ab/nsp31269T1269IaCaaTa22AY.1170.000169
ORF1ab/nsp31269T1269IaCaaTa22AY.120.000632
ORF1ab/nsp31269T1269IaCaaTa22AY.130.000322
ORF1ab/nsp31269T1269IaCaaTa22AY.160.000759
ORF1ab/nsp31269T1269IaCaaTa22AY.320.001065
ORF1ab/nsp31269T1269IaCaaTa22AY.350.000466
ORF1ab/nsp31269T1269IaCaaTa22AY.5.30.000675
ORF1ab/nsp31269T1269IaCaaTa22AY.560.00321
ORF1ab/nsp31269T1269IaCaaTa22AY.75.10.000361
ORF1ab/nsp31269T1269IaCaaTa22B.1.1.2650.006309
ORF1ab/nsp31269T1269IaCaaTa22B.1.1.890.012121
ORF1ab/nsp31269T1269IaCaaTa22B.1.110.30.001437
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.150.001262
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.70.00033
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.80.001505
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.860.000367
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.870.001456
ORF1ab/nsp31269T1269IaCaaTa22B.1.2340.000264
ORF1ab/nsp31269T1269IaCaaTa22B.1.2400.000431
ORF1ab/nsp31269T1269IaCaaTa22B.1.3490.00143
ORF1ab/nsp31269T1269IaCaaTa22B.1.36.310.003503
ORF1ab/nsp31269T1269IaCaaTa22B.1.3850.021277
ORF1ab/nsp31269T1269IaCaaTa22B.1.466.20.000782
ORF1ab/nsp31269T1269IaCaaTa22B.1.4990.002101
ORF1ab/nsp31269T1269IaCaaTa22B.1.5240.002813
ORF1ab/nsp31269T1269IaCaaTa22B.1.6090.000959
ORF1ab/nsp31269T1269IaCaaTa22B.1.6220.025974
ORF1ab/nsp31269T1269IaCaaTa22C.1.20.008511
ORF1ab/nsp31269T1269IaCaaTa22C.350.001548
ORF1ab/nsp31269T1269IaCaaTa22C.36.30.001134
ORF1ab/nsp31269T1269IaCaaTa22P.20.000373
ORF1ab/nsp31269T1269IaCaaTa11A.2.50.000499
ORF1ab/nsp31269T1269IaCaaTa11AD.20.000219
ORF1ab/nsp31269T1269IaCaaTa11AK.10.012658
ORF1ab/nsp31269T1269IaCaaTa11AT.10.005128
ORF1ab/nsp31269T1269IaCaaTa11AU.20.002421
ORF1ab/nsp31269T1269IaCaaTa11AY.1070.000466
ORF1ab/nsp31269T1269IaCaaTa11AY.1160.000287
ORF1ab/nsp31269T1269IaCaaTa11AY.1180.000063
ORF1ab/nsp31269T1269IaCaaTa11AY.140.000088
ORF1ab/nsp31269T1269IaCaaTa11AY.190.00114
ORF1ab/nsp31269T1269IaCaaTa11AY.20.000356
ORF1ab/nsp31269T1269IaCaaTa11AY.300.000396
ORF1ab/nsp31269T1269IaCaaTa11AY.46.40.000165
ORF1ab/nsp31269T1269IaCaaTa11AY.46.50.000198
ORF1ab/nsp31269T1269IaCaaTa11AY.480.000465
ORF1ab/nsp31269T1269IaCaaTa11AY.550.000917
ORF1ab/nsp31269T1269IaCaaTa11AY.590.00053
ORF1ab/nsp31269T1269IaCaaTa11AY.650.000533
ORF1ab/nsp31269T1269IaCaaTa11AY.680.000274
ORF1ab/nsp31269T1269IaCaaTa11AY.70.000196
ORF1ab/nsp31269T1269IaCaaTa11AY.700.000209
ORF1ab/nsp31269T1269IaCaaTa11AY.740.000116
ORF1ab/nsp31269T1269IaCaaTa11AY.790.001211
ORF1ab/nsp31269T1269IaCaaTa11AY.880.000884
ORF1ab/nsp31269T1269IaCaaTa11AY.920.000287
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1280.007092
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1690.018182
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1740.003378
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1890.001513
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2070.001182
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2280.003049
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2410.00207
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2530.002506
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2790.001121
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2840.000107
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2980.000862
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3160.000925
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3720.000689
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.4320.001266
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.500.000679
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.5060.037037
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.5070.008696
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.80.003584
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.160.000664
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.20.004545
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.210.000076
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.430.001477
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.580.001332
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.730.000566
ORF1ab/nsp31269T1269IaCaaTa11B.1.1820.007246
ORF1ab/nsp31269T1269IaCaaTa11B.1.2060.000816
ORF1ab/nsp31269T1269IaCaaTa11B.1.230.006061
ORF1ab/nsp31269T1269IaCaaTa11B.1.2320.000537
ORF1ab/nsp31269T1269IaCaaTa11B.1.2370.004975
ORF1ab/nsp31269T1269IaCaaTa11B.1.2790.000514
ORF1ab/nsp31269T1269IaCaaTa11B.1.3200.001245
ORF1ab/nsp31269T1269IaCaaTa11B.1.3240.001605
ORF1ab/nsp31269T1269IaCaaTa11B.1.3290.000608
ORF1ab/nsp31269T1269IaCaaTa11B.1.351.20.000303
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.180.00042
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.220.001208
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.70.004
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.90.003215
ORF1ab/nsp31269T1269IaCaaTa11B.1.3670.000792
ORF1ab/nsp31269T1269IaCaaTa11B.1.3890.001002
ORF1ab/nsp31269T1269IaCaaTa11B.1.3970.004854
ORF1ab/nsp31269T1269IaCaaTa11B.1.4000.000429
ORF1ab/nsp31269T1269IaCaaTa11B.1.4010.008197
ORF1ab/nsp31269T1269IaCaaTa11B.1.4040.001302
ORF1ab/nsp31269T1269IaCaaTa11B.1.4800.002488
ORF1ab/nsp31269T1269IaCaaTa11B.1.5510.00129
ORF1ab/nsp31269T1269IaCaaTa11B.1.5650.00081
ORF1ab/nsp31269T1269IaCaaTa11B.1.5670.003333
ORF1ab/nsp31269T1269IaCaaTa11B.1.6120.002653
ORF1ab/nsp31269T1269IaCaaTa11B.1.621.10.000506
ORF1ab/nsp31269T1269IaCaaTa11B.1.6280.000352
ORF1ab/nsp31269T1269IaCaaTa11B.400.000364
ORF1ab/nsp31269T1269IaCaaTa11C.20.016129
ORF1ab/nsp31269T1269IaCaaTa11C.37.10.002618
ORF1ab/nsp31269T1269IaCaaTa11C.40.01
ORF1ab/nsp31269T1269IaCaaTa11D.50.004975
ORF1ab/nsp31269T1269IaCaaTa11N.50.001767
ORF1ab/nsp31269T1269IaCaaTa11P.1.150.000232
ORF1ab/nsp31269T1269IaCaaTa11P.1.160.000374
ORF1ab/nsp31269T1269IaCaaTa11P.70.004367
ORF1ab/nsp31269T1269IaCaaTa11Q.70.001111
ORF1ab/nsp31269T1269IaCaaTa11W.30.005263