CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1269 | T1269I | T2087I | nonsyn | aCa | aTa | 8168 | 8165 | 0.999633 | 6524-6526 |
ORF1ab/nsp3 | 1269 | T1269I | T2087I | nonsyn | aCA | aTT | 8168 | 3 | 0.000367287 | 6524-6526 |
Details of the mutation T1269I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8165 | 8168 | All | 0.001562 |
ORF1ab/nsp3 | 1269 | T1269I | aCA | aTT | 3 | 8168 | All | 0.000001 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1327 | 1327 | B.1.1.7 | 0.001188 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 985 | 985 | B.1.637 | 0.071977 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 808 | 808 | AY.4 | 0.001258 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 762 | 764 | B.1.2 | 0.00671 |
ORF1ab/nsp3 | 1269 | T1269I | aCA | aTT | 2 | 764 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 343 | 343 | B.1.221.1 | 0.997093 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 320 | 320 | B.1.617.2 | 0.001205 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 310 | 310 | AY.4.2 | 0.006723 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 219 | 220 | AY.44 | 0.001333 |
ORF1ab/nsp3 | 1269 | T1269I | aCA | aTT | 1 | 220 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 183 | 183 | AY.25 | 0.001101 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 136 | 136 | AY.43 | 0.000603 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 123 | 123 | B.1 | 0.001127 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 114 | 114 | AY.103 | 0.000708 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 108 | 108 | AY.20 | 0.004197 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 108 | 108 | AY.3 | 0.001074 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 91 | 91 | AY.47 | 0.002831 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 90 | 90 | B.1.1.214 | 0.004991 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 84 | 84 | AY.9.2 | 0.003085 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 84 | 84 | B.1.160 | 0.00262 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 82 | 82 | B.1.177 | 0.00108 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 76 | 76 | AY.100 | 0.003497 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 75 | 75 | AY.3.1 | 0.006394 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 74 | 74 | B.1.351 | 0.0022 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 71 | 71 | P.1 | 0.001119 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 62 | 62 | AY.26 | 0.001755 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 54 | 54 | AY.102 | 0.001432 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 52 | 52 | B.1.1 | 0.000943 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 50 | 50 | B.1.221 | 0.003552 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 49 | 49 | B.1.311 | 0.013454 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 46 | 46 | AY.120 | 0.00171 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 37 | 37 | B.1.429 | 0.000871 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 37 | 37 | B.1.603 | 0.393617 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 34 | 34 | B.1.258.17 | 0.003535 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 33 | 33 | AZ.2 | 0.027094 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 33 | 33 | B.1.243 | 0.002296 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 30 | 30 | AY.39 | 0.000741 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 29 | 29 | B.1.1.63 | 0.011188 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 28 | 28 | B.1.1.519 | 0.001112 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 26 | 26 | B.1.1.28 | 0.008092 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 24 | 24 | AY.1 | 0.009497 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 24 | 24 | B.1.177.75 | 0.024974 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 24 | 24 | P.1.14 | 0.001147 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 22 | 22 | B.1.36 | 0.00321 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 21 | 21 | AY.54 | 0.002002 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 21 | 21 | B.1.1.332 | 0.65625 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 20 | 20 | B.1.636 | 0.134228 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 20 | 20 | C.37 | 0.002321 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 18 | 18 | Q.1 | 0.002274 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 17 | 17 | AY.98 | 0.001343 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 16 | 16 | AY.120.2 | 0.020566 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 16 | 16 | B.1.575 | 0.004854 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 13 | 13 | AY.90 | 0.008898 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 13 | 13 | B.1.177.81 | 0.002461 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 12 | 12 | AY.45 | 0.00146 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 11 | 11 | B.1.177.77 | 0.007988 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | B.1.128 | 0.006353 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | B.1.160.14 | 0.021186 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | B.1.433 | 0.031949 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | AY.82 | 0.012212 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | B.1.241 | 0.007305 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | B.1.36.17 | 0.004447 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | B.1.1.37 | 0.001543 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | B.1.549 | 0.057554 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 7 | 7 | AY.77 | 0.007892 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 7 | 7 | B.1.428 | 0.007143 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 7 | 7 | P.6 | 0.022013 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 6 | 6 | B.1.1.170 | 0.007481 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 6 | 6 | B.1.1.194 | 0.029703 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 6 | 6 | B.1.214.2 | 0.003597 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | A | 0.001935 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | C.36.2 | 0.172414 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.160.28 | 0.011696 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.258.11 | 0.001585 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.564.1 | 0.004732 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.385 | 0.021277 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | B.1.622 | 0.025974 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1269 | T1269I | aCa | aTa | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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