CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1250T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31250T1250TT2068TsynacTacC5014730.9441126467-6469
ORF1ab/nsp31250T1250TT2068TsynacTacA501260.05189626467-6469
ORF1ab/nsp31250T1250TT2068TsynacTacG50120.003992026467-6469

Details of the mutation T1250T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31250T1250TacTacC473501All0.00009
ORF1ab/nsp31250T1250TacTacA26501All0.000005
ORF1ab/nsp31250T1250TacTacG2501All0
ORF1ab/nsp31250T1250TacTacC156157AY.1030.000969
ORF1ab/nsp31250T1250TacTacA1157AY.1030.000006
ORF1ab/nsp31250T1250TacTacC5454AY.250.000325
ORF1ab/nsp31250T1250TacTacC5153AY.40.000079
ORF1ab/nsp31250T1250TacTacA253AY.40.000003
ORF1ab/nsp31250T1250TacTacC4141B.1.4290.000965
ORF1ab/nsp31250T1250TacTacC2828B.1.10.000508
ORF1ab/nsp31250T1250TacTacC1416B.1.1.70.000013
ORF1ab/nsp31250T1250TacTacA216B.1.1.70.000002
ORF1ab/nsp31250T1250TacTacC1212AY.440.000073
ORF1ab/nsp31250T1250TacTacC1111B.1.617.20.000041
ORF1ab/nsp31250T1250TacTacC89B.1.20.00007
ORF1ab/nsp31250T1250TacTacA19B.1.20.000009
ORF1ab/nsp31250T1250TacTacC48P.1.140.000191
ORF1ab/nsp31250T1250TacTacA48P.1.140.000191
ORF1ab/nsp31250T1250TacTacC67AY.4.20.00013
ORF1ab/nsp31250T1250TacTacG17AY.4.20.000022
ORF1ab/nsp31250T1250TacTacC77B.10.000064
ORF1ab/nsp31250T1250TacTacC77B.1.5260.000165
ORF1ab/nsp31250T1250TacTacA66B.1.177.730.003398
ORF1ab/nsp31250T1250TacTacC66B.1.390.023438
ORF1ab/nsp31250T1250TacTacC55AY.430.000022
ORF1ab/nsp31250T1250TacTacC44B.1.6210.000354
ORF1ab/nsp31250T1250TacTacC44P.10.000063
ORF1ab/nsp31250T1250TacTacC33AY.1020.00008
ORF1ab/nsp31250T1250TacTacC33AY.910.002191
ORF1ab/nsp31250T1250TacTacC33B.1.1.3180.000905
ORF1ab/nsp31250T1250TacTacC23B.1.1770.000026
ORF1ab/nsp31250T1250TacTacA13B.1.1770.000013
ORF1ab/nsp31250T1250TacTacC33B.1.2340.000396
ORF1ab/nsp31250T1250TacTacC33B.1.4270.000151
ORF1ab/nsp31250T1250TacTacC22AY.16.10.00094
ORF1ab/nsp31250T1250TacTacG12AY.200.000039
ORF1ab/nsp31250T1250TacTacC12AY.200.000039
ORF1ab/nsp31250T1250TacTacC22AY.230.000139
ORF1ab/nsp31250T1250TacTacC22AY.260.000057
ORF1ab/nsp31250T1250TacTacC22AY.290.000032
ORF1ab/nsp31250T1250TacTacA22AY.9.20.000073
ORF1ab/nsp31250T1250TacTacC22B.1.177.40.000422
ORF1ab/nsp31250T1250TacTacC22B.1.466.10.014388
ORF1ab/nsp31250T1250TacTacC22Q.10.000253
ORF1ab/nsp31250T1250TacTacA110.055556
ORF1ab/nsp31250T1250TacTacC11A.2.20.001689
ORF1ab/nsp31250T1250TacTacA11AY.1210.000135
ORF1ab/nsp31250T1250TacTacC11AY.30.00001
ORF1ab/nsp31250T1250TacTacA11AY.300.000396
ORF1ab/nsp31250T1250TacTacC11AY.4.2.10.000149
ORF1ab/nsp31250T1250TacTacC11AY.4.50.000107
ORF1ab/nsp31250T1250TacTacC11AY.460.000104
ORF1ab/nsp31250T1250TacTacC11AY.46.50.000198
ORF1ab/nsp31250T1250TacTacC11AY.5.40.000277
ORF1ab/nsp31250T1250TacTacC11AY.680.000274
ORF1ab/nsp31250T1250TacTacC11AY.750.000056
ORF1ab/nsp31250T1250TacTacC11AY.75.10.00018
ORF1ab/nsp31250T1250TacTacC11AY.980.000079
ORF1ab/nsp31250T1250TacTacC11AY.99.20.000092
ORF1ab/nsp31250T1250TacTacC11B0.000128
ORF1ab/nsp31250T1250TacTacC11B.1.1.3170.000412
ORF1ab/nsp31250T1250TacTacC11B.1.1.3370.003597
ORF1ab/nsp31250T1250TacTacC11B.1.1.3480.000796
ORF1ab/nsp31250T1250TacTacC11B.1.1.4670.019231
ORF1ab/nsp31250T1250TacTacC11B.1.1600.000031
ORF1ab/nsp31250T1250TacTacC11B.1.177.720.00339
ORF1ab/nsp31250T1250TacTacC11B.1.2210.000071
ORF1ab/nsp31250T1250TacTacA11B.1.5960.000087
ORF1ab/nsp31250T1250TacTacC11B.1.6000.005848
ORF1ab/nsp31250T1250TacTacA11B.1.6090.000479
ORF1ab/nsp31250T1250TacTacA11B.1.617.30.002985
ORF1ab/nsp31250T1250TacTacC11B.1.6330.041667
ORF1ab/nsp31250T1250TacTacA11B.1.6370.000073
ORF1ab/nsp31250T1250TacTacC11P.1.170.000162