CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1063T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31063T1063TT1881TsynacTacC2171990.9170515906-5908
ORF1ab/nsp31063T1063TT1881TsynacTacG21790.04147475906-5908
ORF1ab/nsp31063T1063TT1881TsynacTacA21790.04147475906-5908

Details of the mutation T1063T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31063T1063TacTacC199217All0.000038
ORF1ab/nsp31063T1063TacTacG9217All0.000002
ORF1ab/nsp31063T1063TacTacA9217All0.000002
ORF1ab/nsp31063T1063TacTacC4141B.1.20.000361
ORF1ab/nsp31063T1063TacTacC2424AY.40.000037
ORF1ab/nsp31063T1063TacTacC1617B.1.10.00029
ORF1ab/nsp31063T1063TacTacA117B.1.10.000018
ORF1ab/nsp31063T1063TacTacC1515B.1.6090.007191
ORF1ab/nsp31063T1063TacTacC1414B.10.000128
ORF1ab/nsp31063T1063TacTacC1212AY.30.000119
ORF1ab/nsp31063T1063TacTacC810B.1.1.70.000007
ORF1ab/nsp31063T1063TacTacG210B.1.1.70.000002
ORF1ab/nsp31063T1063TacTacC88B.1.177.440.004152
ORF1ab/nsp31063T1063TacTacC66AY.1020.000159
ORF1ab/nsp31063T1063TacTacC66AY.430.000027
ORF1ab/nsp31063T1063TacTacA240.111111
ORF1ab/nsp31063T1063TacTacC240.111111
ORF1ab/nsp31063T1063TacTacC44AY.250.000024
ORF1ab/nsp31063T1063TacTacC44R.10.00036
ORF1ab/nsp31063T1063TacTacC33AY.400.002893
ORF1ab/nsp31063T1063TacTacC33B.1.1.280.000934
ORF1ab/nsp31063T1063TacTacC33B.1.3510.000089
ORF1ab/nsp31063T1063TacTacC33B.1.360.000438
ORF1ab/nsp31063T1063TacTacA23B.1.617.20.000008
ORF1ab/nsp31063T1063TacTacC13B.1.617.20.000004
ORF1ab/nsp31063T1063TacTacG22AE.80.000978
ORF1ab/nsp31063T1063TacTacC22AY.1000.000092
ORF1ab/nsp31063T1063TacTacC22AY.290.000032
ORF1ab/nsp31063T1063TacTacC22AY.390.000049
ORF1ab/nsp31063T1063TacTacC22B.1.5250.000226
ORF1ab/nsp31063T1063TacTacG22B.1.5950.000522
ORF1ab/nsp31063T1063TacTacC12P.10.000016
ORF1ab/nsp31063T1063TacTacA12P.10.000016
ORF1ab/nsp31063T1063TacTacC11AY.116.10.000311
ORF1ab/nsp31063T1063TacTacC11AY.20.000356
ORF1ab/nsp31063T1063TacTacC11AY.200.000039
ORF1ab/nsp31063T1063TacTacA11AY.230.00007
ORF1ab/nsp31063T1063TacTacC11AY.420.00004
ORF1ab/nsp31063T1063TacTacC11AY.460.000104
ORF1ab/nsp31063T1063TacTacC11AY.46.20.000635
ORF1ab/nsp31063T1063TacTacC11AY.690.000187
ORF1ab/nsp31063T1063TacTacC11B.1.1.100.001115
ORF1ab/nsp31063T1063TacTacC11B.1.1.2070.001182
ORF1ab/nsp31063T1063TacTacC11B.1.1600.000031
ORF1ab/nsp31063T1063TacTacG11B.1.177.450.000381
ORF1ab/nsp31063T1063TacTacC11B.1.2340.000132
ORF1ab/nsp31063T1063TacTacC11B.1.3360.002439
ORF1ab/nsp31063T1063TacTacG11B.1.4380.006536
ORF1ab/nsp31063T1063TacTacC11B.1.4560.003268
ORF1ab/nsp31063T1063TacTacC11B.1.466.20.000391
ORF1ab/nsp31063T1063TacTacA11B.1.5260.000024
ORF1ab/nsp31063T1063TacTacA11B.1.5890.007576
ORF1ab/nsp31063T1063TacTacC11C.60.037037
ORF1ab/nsp31063T1063TacTacG11P.1.10.000318
ORF1ab/nsp31063T1063TacTacC11P.1.150.000232
ORF1ab/nsp31063T1063TacTacC11Q.30.000145