CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = T1004I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31004T1004IT1822InonsynaCtaTt115961159615729-5731

Details of the mutation T1004I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31004T1004IaCtaTt1159611596All0.002218
ORF1ab/nsp31004T1004IaCtaTt14421442B.1.1.70.001291
ORF1ab/nsp31004T1004IaCtaTt13441344B.1.1280.853875
ORF1ab/nsp31004T1004IaCtaTt11691169AY.500.934452
ORF1ab/nsp31004T1004IaCtaTt609609AY.250.003663
ORF1ab/nsp31004T1004IaCtaTt562562AY.840.245844
ORF1ab/nsp31004T1004IaCtaTt546546B.1.617.20.002056
ORF1ab/nsp31004T1004IaCtaTt502502AY.40.000781
ORF1ab/nsp31004T1004IaCtaTt416416B.1.20.003663
ORF1ab/nsp31004T1004IaCtaTt406406B.1.6250.955294
ORF1ab/nsp31004T1004IaCtaTt371371AY.430.001644
ORF1ab/nsp31004T1004IaCtaTt307307B.1.36.90.987138
ORF1ab/nsp31004T1004IaCtaTt182182AY.540.017353
ORF1ab/nsp31004T1004IaCtaTt181181B.1.1.5190.007188
ORF1ab/nsp31004T1004IaCtaTt181181P.10.002851
ORF1ab/nsp31004T1004IaCtaTt161161AY.440.00098
ORF1ab/nsp31004T1004IaCtaTt152152B.1.1770.002001
ORF1ab/nsp31004T1004IaCtaTt150150B.1.10.002721
ORF1ab/nsp31004T1004IaCtaTt146146B.10.001337
ORF1ab/nsp31004T1004IaCtaTt142142AY.34.10.072412
ORF1ab/nsp31004T1004IaCtaTt140140AY.1030.000869
ORF1ab/nsp31004T1004IaCtaTt119119B.1.5750.036104
ORF1ab/nsp31004T1004IaCtaTt118118B.1.2210.008382
ORF1ab/nsp31004T1004IaCtaTt116116AY.1020.003076
ORF1ab/nsp31004T1004IaCtaTt9191AY.200.003537
ORF1ab/nsp31004T1004IaCtaTt8888AY.470.002737
ORF1ab/nsp31004T1004IaCtaTt8787AY.30.000865
ORF1ab/nsp31004T1004IaCtaTt7070C.370.008124
ORF1ab/nsp31004T1004IaCtaTt6565B.1.258.170.006758
ORF1ab/nsp31004T1004IaCtaTt6363AY.390.001557
ORF1ab/nsp31004T1004IaCtaTt6060B.1.5260.00141
ORF1ab/nsp31004T1004IaCtaTt5353B.1.160.240.234513
ORF1ab/nsp31004T1004IaCtaTt5050B.1.1.2960.909091
ORF1ab/nsp31004T1004IaCtaTt4848AY.75.10.008655
ORF1ab/nsp31004T1004IaCtaTt4040B.1.177.800.076482
ORF1ab/nsp31004T1004IaCtaTt3939AY.9.20.001432
ORF1ab/nsp31004T1004IaCtaTt3939B.1.6370.00285
ORF1ab/nsp31004T1004IaCtaTt3535AY.290.000552
ORF1ab/nsp31004T1004IaCtaTt3434B.1.3490.024303
ORF1ab/nsp31004T1004IaCtaTt3434Q.10.004295
ORF1ab/nsp31004T1004IaCtaTt3333B.1.1600.001029
ORF1ab/nsp31004T1004IaCtaTt3131AY.39.10.001228
ORF1ab/nsp31004T1004IaCtaTt3030B.1.1.630.011574
ORF1ab/nsp31004T1004IaCtaTt2929B.1.5250.003282
ORF1ab/nsp31004T1004IaCtaTt2626AY.1010.012751
ORF1ab/nsp31004T1004IaCtaTt2323B.1.177.210.001759
ORF1ab/nsp31004T1004IaCtaTt2222B.1.2340.002903
ORF1ab/nsp31004T1004IaCtaTt2121B.1.4290.000494
ORF1ab/nsp31004T1004IaCtaTt2020AY.1110.003663
ORF1ab/nsp31004T1004IaCtaTt2020AY.1200.000744
ORF1ab/nsp31004T1004IaCtaTt2020B.1.177.600.004369
ORF1ab/nsp31004T1004IaCtaTt1818B.1.6310.060606
ORF1ab/nsp31004T1004IaCtaTt1717AY.99.20.001567
ORF1ab/nsp31004T1004IaCtaTt1717B.1.1.1760.007469
ORF1ab/nsp31004T1004IaCtaTt1717B.1.177.120.002579
ORF1ab/nsp31004T1004IaCtaTt1717B.1.351.20.005144
ORF1ab/nsp31004T1004IaCtaTt1616AY.230.001116
ORF1ab/nsp31004T1004IaCtaTt1616AY.420.000644
ORF1ab/nsp31004T1004IaCtaTt1515AY.9.10.001256
ORF1ab/nsp31004T1004IaCtaTt1414AY.320.007455
ORF1ab/nsp31004T1004IaCtaTt1414B.1.3060.08
ORF1ab/nsp31004T1004IaCtaTt1313AY.1000.000598
ORF1ab/nsp31004T1004IaCtaTt1313B.1.2060.010604
ORF1ab/nsp31004T1004IaCtaTt1313C.180.033679
ORF1ab/nsp31004T1004IaCtaTt1212AY.1190.000424
ORF1ab/nsp31004T1004IaCtaTt1212AY.1210.001624
ORF1ab/nsp31004T1004IaCtaTt1212AY.260.00034
ORF1ab/nsp31004T1004IaCtaTt1212B.1.177.40.002533
ORF1ab/nsp31004T1004IaCtaTt1212B.1.2360.024641
ORF1ab/nsp31004T1004IaCtaTt1212B.1.3910.013529
ORF1ab/nsp31004T1004IaCtaTt1212B.1.5950.003132
ORF1ab/nsp31004T1004IaCtaTt1111AY.280.020794
ORF1ab/nsp31004T1004IaCtaTt1111AY.610.001153
ORF1ab/nsp31004T1004IaCtaTt1111AY.90.000744
ORF1ab/nsp31004T1004IaCtaTt1111B.1.3510.000327
ORF1ab/nsp31004T1004IaCtaTt1010AY.1180.000626
ORF1ab/nsp31004T1004IaCtaTt1010AY.330.000668
ORF1ab/nsp31004T1004IaCtaTt1010AY.340.00097
ORF1ab/nsp31004T1004IaCtaTt1010AY.46.60.000722
ORF1ab/nsp31004T1004IaCtaTt1010AY.490.031949
ORF1ab/nsp31004T1004IaCtaTt1010AY.50.000206
ORF1ab/nsp31004T1004IaCtaTt1010AY.740.001156
ORF1ab/nsp31004T1004IaCtaTt1010B.1.258.30.01675
ORF1ab/nsp31004T1004IaCtaTt1010P.20.001866
ORF1ab/nsp31004T1004IaCtaTt1010Q.80.001649
ORF1ab/nsp31004T1004IaCtaTt99AA.60.145161
ORF1ab/nsp31004T1004IaCtaTt99AY.4.50.000967
ORF1ab/nsp31004T1004IaCtaTt99AY.450.001095
ORF1ab/nsp31004T1004IaCtaTt99AY.5.30.003036
ORF1ab/nsp31004T1004IaCtaTt99B.1.6210.000797
ORF1ab/nsp31004T1004IaCtaTt99P.1.120.004356
ORF1ab/nsp31004T1004IaCtaTt88AY.750.000448
ORF1ab/nsp31004T1004IaCtaTt88B.1.2430.000557
ORF1ab/nsp31004T1004IaCtaTt88B.1.2580.000532
ORF1ab/nsp31004T1004IaCtaTt88B.1.360.001167
ORF1ab/nsp31004T1004IaCtaTt77AY.60.000288
ORF1ab/nsp31004T1004IaCtaTt77AY.990.007345
ORF1ab/nsp31004T1004IaCtaTt77B0.000895
ORF1ab/nsp31004T1004IaCtaTt77B.1.1.250.00398
ORF1ab/nsp31004T1004IaCtaTt77B.1.1.3910.059829
ORF1ab/nsp31004T1004IaCtaTt77B.1.177.860.001284
ORF1ab/nsp31004T1004IaCtaTt77B.1.36.260.02
ORF1ab/nsp31004T1004IaCtaTt77B.1.4270.000353
ORF1ab/nsp31004T1004IaCtaTt66A.2.50.002994
ORF1ab/nsp31004T1004IaCtaTt66AY.1170.000507
ORF1ab/nsp31004T1004IaCtaTt66AY.16.10.00282
ORF1ab/nsp31004T1004IaCtaTt66AY.4.20.00013
ORF1ab/nsp31004T1004IaCtaTt66AY.46.40.000987
ORF1ab/nsp31004T1004IaCtaTt66AY.98.10.000291
ORF1ab/nsp31004T1004IaCtaTt66B.1.1.2430.02449
ORF1ab/nsp31004T1004IaCtaTt66B.1.1.3760.035714
ORF1ab/nsp31004T1004IaCtaTt66B.1.466.20.002347
ORF1ab/nsp31004T1004IaCtaTt66C.160.006363
ORF1ab/nsp31004T1004IaCtaTt66P.1.170.000971
ORF1ab/nsp31004T1004IaCtaTt55AY.1130.000712
ORF1ab/nsp31004T1004IaCtaTt55AY.580.004537
ORF1ab/nsp31004T1004IaCtaTt55AY.910.003652
ORF1ab/nsp31004T1004IaCtaTt55B.1.1.280.001556
ORF1ab/nsp31004T1004IaCtaTt55B.1.5960.000436
ORF1ab/nsp31004T1004IaCtaTt55D.50.024876
ORF1ab/nsp31004T1004IaCtaTt55P.1.100.001347
ORF1ab/nsp31004T1004IaCtaTt44A.10.001127
ORF1ab/nsp31004T1004IaCtaTt44AY.620.001743
ORF1ab/nsp31004T1004IaCtaTt44B.1.1.2200.007435
ORF1ab/nsp31004T1004IaCtaTt44B.1.1.2220.000816
ORF1ab/nsp31004T1004IaCtaTt44B.1.177.70.000659
ORF1ab/nsp31004T1004IaCtaTt44B.1.36.170.001976
ORF1ab/nsp31004T1004IaCtaTt44B.1.4710.010929
ORF1ab/nsp31004T1004IaCtaTt44B.1.617.10.000516
ORF1ab/nsp31004T1004IaCtaTt44P.1.160.001496
ORF1ab/nsp31004T1004IaCtaTt33AY.1060.001005
ORF1ab/nsp31004T1004IaCtaTt33AY.1160.00086
ORF1ab/nsp31004T1004IaCtaTt33AY.270.000194
ORF1ab/nsp31004T1004IaCtaTt33AY.460.000312
ORF1ab/nsp31004T1004IaCtaTt33AY.550.002752
ORF1ab/nsp31004T1004IaCtaTt33AY.590.001589
ORF1ab/nsp31004T1004IaCtaTt33AY.70.000588
ORF1ab/nsp31004T1004IaCtaTt33AY.770.003382
ORF1ab/nsp31004T1004IaCtaTt33AY.920.000862
ORF1ab/nsp31004T1004IaCtaTt33AY.980.000237
ORF1ab/nsp31004T1004IaCtaTt33B.1.1.2800.009259
ORF1ab/nsp31004T1004IaCtaTt33B.1.177.520.005272
ORF1ab/nsp31004T1004IaCtaTt33B.1.258.40.010345
ORF1ab/nsp31004T1004IaCtaTt33B.1.2890.007979
ORF1ab/nsp31004T1004IaCtaTt33B.1.36.160.004274
ORF1ab/nsp31004T1004IaCtaTt33B.1.3670.002377
ORF1ab/nsp31004T1004IaCtaTt33B.1.438.10.000322
ORF1ab/nsp31004T1004IaCtaTt33B.1.5400.029126
ORF1ab/nsp31004T1004IaCtaTt33B.1.5880.00273
ORF1ab/nsp31004T1004IaCtaTt33C.350.002322
ORF1ab/nsp31004T1004IaCtaTt33P.1.140.000143
ORF1ab/nsp31004T1004IaCtaTt22A.270.003311
ORF1ab/nsp31004T1004IaCtaTt22AY.1100.000225
ORF1ab/nsp31004T1004IaCtaTt22AY.120.10.000642
ORF1ab/nsp31004T1004IaCtaTt22AY.140.000176
ORF1ab/nsp31004T1004IaCtaTt22AY.29.10.000441
ORF1ab/nsp31004T1004IaCtaTt22AY.3.10.000171
ORF1ab/nsp31004T1004IaCtaTt22AY.350.000466
ORF1ab/nsp31004T1004IaCtaTt22AY.370.000632
ORF1ab/nsp31004T1004IaCtaTt22AY.380.000999
ORF1ab/nsp31004T1004IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31004T1004IaCtaTt22AY.410.000588
ORF1ab/nsp31004T1004IaCtaTt22AY.480.00093
ORF1ab/nsp31004T1004IaCtaTt22AY.640.00119
ORF1ab/nsp31004T1004IaCtaTt22AY.710.00095
ORF1ab/nsp31004T1004IaCtaTt22AY.760.009662
ORF1ab/nsp31004T1004IaCtaTt22AY.890.009804
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.100.00223
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.1610.007067
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2660.02439
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2690.002706
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2840.000215
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3060.000877
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3160.00185
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3480.001592
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3710.020833
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.4480.004065
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.4860.003155
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.5230.003125
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.5260.007092
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.890.012121
ORF1ab/nsp31004T1004IaCtaTt22B.1.177.180.00232
ORF1ab/nsp31004T1004IaCtaTt22B.1.177.720.00678
ORF1ab/nsp31004T1004IaCtaTt22B.1.2400.000431
ORF1ab/nsp31004T1004IaCtaTt22B.1.2600.006689
ORF1ab/nsp31004T1004IaCtaTt22B.1.36.290.001035
ORF1ab/nsp31004T1004IaCtaTt22B.1.3690.00057
ORF1ab/nsp31004T1004IaCtaTt22B.1.466.10.014388
ORF1ab/nsp31004T1004IaCtaTt22B.1.4990.002101
ORF1ab/nsp31004T1004IaCtaTt22B.1.5460.007407
ORF1ab/nsp31004T1004IaCtaTt22B.1.5610.000794
ORF1ab/nsp31004T1004IaCtaTt22B.1.9.50.011364
ORF1ab/nsp31004T1004IaCtaTt22B.40.004415
ORF1ab/nsp31004T1004IaCtaTt22C.37.10.005236
ORF1ab/nsp31004T1004IaCtaTt22D.20.00015
ORF1ab/nsp31004T1004IaCtaTt22P.1.10.000635
ORF1ab/nsp31004T1004IaCtaTt22R.10.00018
ORF1ab/nsp31004T1004IaCtaTt11A.20.000662
ORF1ab/nsp31004T1004IaCtaTt11A.2.20.001689
ORF1ab/nsp31004T1004IaCtaTt11A.2.5.20.001572
ORF1ab/nsp31004T1004IaCtaTt11A.230.010526
ORF1ab/nsp31004T1004IaCtaTt11A.23.10.000704
ORF1ab/nsp31004T1004IaCtaTt11A.50.001923
ORF1ab/nsp31004T1004IaCtaTt11AP.10.001502
ORF1ab/nsp31004T1004IaCtaTt11AW.10.003049
ORF1ab/nsp31004T1004IaCtaTt11AY.1070.000466
ORF1ab/nsp31004T1004IaCtaTt11AY.1080.001103
ORF1ab/nsp31004T1004IaCtaTt11AY.1140.000231
ORF1ab/nsp31004T1004IaCtaTt11AY.1150.005208
ORF1ab/nsp31004T1004IaCtaTt11AY.130.000161
ORF1ab/nsp31004T1004IaCtaTt11AY.240.000431
ORF1ab/nsp31004T1004IaCtaTt11AY.300.000396
ORF1ab/nsp31004T1004IaCtaTt11AY.39.20.001541
ORF1ab/nsp31004T1004IaCtaTt11AY.46.20.000635
ORF1ab/nsp31004T1004IaCtaTt11AY.5.40.000277
ORF1ab/nsp31004T1004IaCtaTt11AY.680.000274
ORF1ab/nsp31004T1004IaCtaTt11AY.690.000187
ORF1ab/nsp31004T1004IaCtaTt11AY.7.10.000113
ORF1ab/nsp31004T1004IaCtaTt11AY.850.000427
ORF1ab/nsp31004T1004IaCtaTt11AY.860.00083
ORF1ab/nsp31004T1004IaCtaTt11AY.880.000884
ORF1ab/nsp31004T1004IaCtaTt11AY.940.000443
ORF1ab/nsp31004T1004IaCtaTt11AZ.10.000867
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.10.000327
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1850.076923
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1920.002309
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2280.003049
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2360.006897
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2880.001916
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2940.001266
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3110.000358
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3260.001761
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3810.04
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.4130.006897
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.4170.002703
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.5070.008696
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.510.001718
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.610.008772
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.700.000341
ORF1ab/nsp31004T1004IaCtaTt11B.1.1050.009615
ORF1ab/nsp31004T1004IaCtaTt11B.1.1390.000733
ORF1ab/nsp31004T1004IaCtaTt11B.1.1430.021277
ORF1ab/nsp31004T1004IaCtaTt11B.1.1470.000756
ORF1ab/nsp31004T1004IaCtaTt11B.1.1570.002985
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.100.000878
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.460.000918
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.540.000606
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.560.000668
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.820.000477
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.840.006667
ORF1ab/nsp31004T1004IaCtaTt11B.1.1870.033333
ORF1ab/nsp31004T1004IaCtaTt11B.1.1980.071429
ORF1ab/nsp31004T1004IaCtaTt11B.1.2100.002132
ORF1ab/nsp31004T1004IaCtaTt11B.1.214.20.0006
ORF1ab/nsp31004T1004IaCtaTt11B.1.221.30.000833
ORF1ab/nsp31004T1004IaCtaTt11B.1.2790.000514
ORF1ab/nsp31004T1004IaCtaTt11B.1.30.002618
ORF1ab/nsp31004T1004IaCtaTt11B.1.3150.006061
ORF1ab/nsp31004T1004IaCtaTt11B.1.3200.001245
ORF1ab/nsp31004T1004IaCtaTt11B.1.3360.002439
ORF1ab/nsp31004T1004IaCtaTt11B.1.3460.001311
ORF1ab/nsp31004T1004IaCtaTt11B.1.36.80.001
ORF1ab/nsp31004T1004IaCtaTt11B.1.416.10.001563
ORF1ab/nsp31004T1004IaCtaTt11B.1.4330.003195
ORF1ab/nsp31004T1004IaCtaTt11B.1.4700.001404
ORF1ab/nsp31004T1004IaCtaTt11B.1.4740.001901
ORF1ab/nsp31004T1004IaCtaTt11B.1.4970.000315
ORF1ab/nsp31004T1004IaCtaTt11B.1.5170.000427
ORF1ab/nsp31004T1004IaCtaTt11B.1.5240.001406
ORF1ab/nsp31004T1004IaCtaTt11B.1.5600.00463
ORF1ab/nsp31004T1004IaCtaTt11B.1.5680.001111
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