CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S702F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3702S702FS1520FnonsyntCttTt233623350.9995724823-4825
ORF1ab/nsp3702S702FS1520FnonsyntCTtTC233610.0004280824823-4825

Details of the mutation S702F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3702S702FtCttTt23352336All0.000447
ORF1ab/nsp3702S702FtCTtTC12336All0
ORF1ab/nsp3702S702FtCttTt10221022AY.40.001591
ORF1ab/nsp3702S702FtCttTt375375B.1.1.70.000336
ORF1ab/nsp3702S702FtCttTt276276B.1.1.3370.992806
ORF1ab/nsp3702S702FtCttTt4848B.10.00044
ORF1ab/nsp3702S702FtCttTt4545B.1.6340.15411
ORF1ab/nsp3702S702FtCttTt4343B.1.1600.001341
ORF1ab/nsp3702S702FtCttTt4343B.1.617.20.000162
ORF1ab/nsp3702S702FtCttTt4141AY.340.003976
ORF1ab/nsp3702S702FtCttTt3131AY.1020.000822
ORF1ab/nsp3702S702FtCttTt2627AY.440.000158
ORF1ab/nsp3702S702FtCTtTC127AY.440.000006
ORF1ab/nsp3702S702FtCttTt2626B.1.10.000472
ORF1ab/nsp3702S702FtCttTt2424AY.1030.000149
ORF1ab/nsp3702S702FtCttTt2424B.1.20.000211
ORF1ab/nsp3702S702FtCttTt2323B.1.1.3060.010083
ORF1ab/nsp3702S702FtCttTt1313AY.30.000129
ORF1ab/nsp3702S702FtCttTt1212AY.250.000072
ORF1ab/nsp3702S702FtCttTt1212P.10.000189
ORF1ab/nsp3702S702FtCttTt1111AY.430.000049
ORF1ab/nsp3702S702FtCttTt99AY.740.001041
ORF1ab/nsp3702S702FtCttTt88AY.98.10.000387
ORF1ab/nsp3702S702FtCttTt88B.1.1.2220.001632
ORF1ab/nsp3702S702FtCttTt77AY.230.000488
ORF1ab/nsp3702S702FtCttTt77AY.420.000282
ORF1ab/nsp3702S702FtCttTt77B.1.1770.000092
ORF1ab/nsp3702S702FtCttTt77C.370.000812
ORF1ab/nsp3702S702FtCttTt77P.20.001306
ORF1ab/nsp3702S702FtCttTt66AY.1130.000854
ORF1ab/nsp3702S702FtCttTt66B.1.1.2670.060606
ORF1ab/nsp3702S702FtCttTt66B.1.1.280.001867
ORF1ab/nsp3702S702FtCttTt66B.1.2210.000426
ORF1ab/nsp3702S702FtCttTt66B.1.4000.002574
ORF1ab/nsp3702S702FtCttTt55AY.390.000124
ORF1ab/nsp3702S702FtCttTt55AY.99.20.000461
ORF1ab/nsp3702S702FtCttTt55B.1.1.5190.000199
ORF1ab/nsp3702S702FtCttTt55B.1.4290.000118
ORF1ab/nsp3702S702FtCttTt44AY.1100.000451
ORF1ab/nsp3702S702FtCttTt44AY.260.000113
ORF1ab/nsp3702S702FtCttTt44AY.39.10.000158
ORF1ab/nsp3702S702FtCttTt44B.1.6090.001918
ORF1ab/nsp3702S702FtCttTt33AY.1000.000138
ORF1ab/nsp3702S702FtCttTt33AY.1170.000254
ORF1ab/nsp3702S702FtCttTt33AY.46.60.000217
ORF1ab/nsp3702S702FtCttTt33B.1.3510.000089
ORF1ab/nsp3702S702FtCttTt33B.1.36.290.001552
ORF1ab/nsp3702S702FtCttTt33B.1.4090.002344
ORF1ab/nsp3702S702FtCttTt33B.1.5260.000071
ORF1ab/nsp3702S702FtCttTt33B.1.6210.000266
ORF1ab/nsp3702S702FtCttTt33B.1.6280.001057
ORF1ab/nsp3702S702FtCttTt33D.20.000225
ORF1ab/nsp3702S702FtCttTt22AY.1190.000071
ORF1ab/nsp3702S702FtCttTt22AY.4.20.000043
ORF1ab/nsp3702S702FtCttTt22AY.450.000243
ORF1ab/nsp3702S702FtCttTt22AY.610.00021
ORF1ab/nsp3702S702FtCttTt22AY.7.10.000225
ORF1ab/nsp3702S702FtCttTt22AY.750.000112
ORF1ab/nsp3702S702FtCttTt22AY.90.000135
ORF1ab/nsp3702S702FtCttTt22AY.9.20.000073
ORF1ab/nsp3702S702FtCttTt22B.1.1.1610.007067
ORF1ab/nsp3702S702FtCttTt22B.1.1.2070.002364
ORF1ab/nsp3702S702FtCttTt22B.1.1.2140.000111
ORF1ab/nsp3702S702FtCttTt22B.1.1.3000.021505
ORF1ab/nsp3702S702FtCttTt22B.1.1.3430.041667
ORF1ab/nsp3702S702FtCttTt22B.1.2340.000264
ORF1ab/nsp3702S702FtCttTt22B.1.2580.000133
ORF1ab/nsp3702S702FtCttTt22B.1.36.80.002
ORF1ab/nsp3702S702FtCttTt22B.1.5870.003795
ORF1ab/nsp3702S702FtCttTt22P.1.140.000096
ORF1ab/nsp3702S702FtCttTt11A.2.20.001689
ORF1ab/nsp3702S702FtCttTt11A.2.40.003367
ORF1ab/nsp3702S702FtCttTt11A.2.50.000499
ORF1ab/nsp3702S702FtCttTt11AY.1140.000231
ORF1ab/nsp3702S702FtCttTt11AY.1200.000037
ORF1ab/nsp3702S702FtCttTt11AY.16.10.00047
ORF1ab/nsp3702S702FtCttTt11AY.190.00114
ORF1ab/nsp3702S702FtCttTt11AY.290.000016
ORF1ab/nsp3702S702FtCttTt11AY.29.10.000221
ORF1ab/nsp3702S702FtCttTt11AY.330.000067
ORF1ab/nsp3702S702FtCttTt11AY.34.10.00051
ORF1ab/nsp3702S702FtCttTt11AY.360.000148
ORF1ab/nsp3702S702FtCttTt11AY.470.000031
ORF1ab/nsp3702S702FtCttTt11AY.9.10.000084
ORF1ab/nsp3702S702FtCttTt11AY.930.000273
ORF1ab/nsp3702S702FtCttTt11B.1.1.1010.01
ORF1ab/nsp3702S702FtCttTt11B.1.1.2200.001859
ORF1ab/nsp3702S702FtCttTt11B.1.1.2440.015385
ORF1ab/nsp3702S702FtCttTt11B.1.1.250.000569
ORF1ab/nsp3702S702FtCttTt11B.1.1.4190.007407
ORF1ab/nsp3702S702FtCttTt11B.1.1.4320.001266
ORF1ab/nsp3702S702FtCttTt11B.1.1470.000756
ORF1ab/nsp3702S702FtCttTt11B.1.1670.007812
ORF1ab/nsp3702S702FtCttTt11B.1.177.120.000152
ORF1ab/nsp3702S702FtCttTt11B.1.177.210.000076
ORF1ab/nsp3702S702FtCttTt11B.1.177.600.000218
ORF1ab/nsp3702S702FtCttTt11B.1.177.730.000566
ORF1ab/nsp3702S702FtCttTt11B.1.258.160.001637
ORF1ab/nsp3702S702FtCttTt11B.1.258.220.002667
ORF1ab/nsp3702S702FtCttTt11B.1.3230.020833
ORF1ab/nsp3702S702FtCttTt11B.1.351.20.000303
ORF1ab/nsp3702S702FtCttTt11B.1.360.000146
ORF1ab/nsp3702S702FtCttTt11B.1.36.170.000494
ORF1ab/nsp3702S702FtCttTt11B.1.3610.001289
ORF1ab/nsp3702S702FtCttTt11B.1.3770.004566
ORF1ab/nsp3702S702FtCttTt11B.1.3900.010638
ORF1ab/nsp3702S702FtCttTt11B.1.4270.00005
ORF1ab/nsp3702S702FtCttTt11B.1.5610.000397
ORF1ab/nsp3702S702FtCttTt11B.1.5640.000426
ORF1ab/nsp3702S702FtCttTt11B.1.5960.000087
ORF1ab/nsp3702S702FtCttTt11B.1.6000.005848
ORF1ab/nsp3702S702FtCttTt11B.1.619.10.000641
ORF1ab/nsp3702S702FtCttTt11B.120.00641
ORF1ab/nsp3702S702FtCttTt11B.6.10.026316
ORF1ab/nsp3702S702FtCttTt11C.36.30.000567
ORF1ab/nsp3702S702FtCttTt11L.20.011364
ORF1ab/nsp3702S702FtCttTt11Q.80.000165
ORF1ab/nsp3702S702FtCttTt11R.10.00009