CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S543S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3543S543SS1361SsyntcTtcC1751250.7142864346-4348
ORF1ab/nsp3543S543SS1361SsyntcTtcG175380.2171434346-4348
ORF1ab/nsp3543S543SS1361SsyntcTtcA175120.06857144346-4348

Details of the mutation S543S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3543S543StcTtcC125175All0.000024
ORF1ab/nsp3543S543StcTtcG38175All0.000007
ORF1ab/nsp3543S543StcTtcA12175All0.000002
ORF1ab/nsp3543S543StcTtcC3743B.1.1.70.000033
ORF1ab/nsp3543S543StcTtcG443B.1.1.70.000004
ORF1ab/nsp3543S543StcTtcA243B.1.1.70.000002
ORF1ab/nsp3543S543StcTtcG3133B.1.4270.001565
ORF1ab/nsp3543S543StcTtcC233B.1.4270.000101
ORF1ab/nsp3543S543StcTtcC1416AY.40.000022
ORF1ab/nsp3543S543StcTtcA216AY.40.000003
ORF1ab/nsp3543S543StcTtcC1111B.1.5260.000259
ORF1ab/nsp3543S543StcTtcC77P.1.140.000335
ORF1ab/nsp3543S543StcTtcC46B.1.4290.000094
ORF1ab/nsp3543S543StcTtcG26B.1.4290.000047
ORF1ab/nsp3543S543StcTtcC66B.1.617.20.000023
ORF1ab/nsp3543S543StcTtcC34AY.440.000018
ORF1ab/nsp3543S543StcTtcG14AY.440.000006
ORF1ab/nsp3543S543StcTtcA34B.10.000027
ORF1ab/nsp3543S543StcTtcC14B.10.000009
ORF1ab/nsp3543S543StcTtcC44B.1.1.5190.000159
ORF1ab/nsp3543S543StcTtcC44B.1.20.000035
ORF1ab/nsp3543S543StcTtcC33AY.240.001293
ORF1ab/nsp3543S543StcTtcC33AY.250.000018
ORF1ab/nsp3543S543StcTtcA23AY.390.000049
ORF1ab/nsp3543S543StcTtcC13AY.390.000025
ORF1ab/nsp3543S543StcTtcC22AY.230.000139
ORF1ab/nsp3543S543StcTtcC22B.1.1770.000026
ORF1ab/nsp3543S543StcTtcC22P.10.000032
ORF1ab/nsp3543S543StcTtcC11A.20.000662
ORF1ab/nsp3543S543StcTtcC11AY.1000.000046
ORF1ab/nsp3543S543StcTtcC11AY.290.000016
ORF1ab/nsp3543S543StcTtcC11AY.30.00001
ORF1ab/nsp3543S543StcTtcC11AY.4.20.000022
ORF1ab/nsp3543S543StcTtcC11AY.50.000021
ORF1ab/nsp3543S543StcTtcC11B0.000128
ORF1ab/nsp3543S543StcTtcC11B.1.10.000018
ORF1ab/nsp3543S543StcTtcC11B.1.1.250.000569
ORF1ab/nsp3543S543StcTtcC11B.1.1.2940.001266
ORF1ab/nsp3543S543StcTtcC11B.1.1.4340.000349
ORF1ab/nsp3543S543StcTtcC11B.1.1.500.000679
ORF1ab/nsp3543S543StcTtcC11B.1.1.630.000386
ORF1ab/nsp3543S543StcTtcC11B.1.177.600.000218
ORF1ab/nsp3543S543StcTtcA11B.1.2580.000067
ORF1ab/nsp3543S543StcTtcC11B.1.3010.005917
ORF1ab/nsp3543S543StcTtcA11B.1.3320.003497
ORF1ab/nsp3543S543StcTtcC11B.1.360.000146
ORF1ab/nsp3543S543StcTtcC11B.1.5250.000113
ORF1ab/nsp3543S543StcTtcC11B.1.5950.000261
ORF1ab/nsp3543S543StcTtcA11B.1.5960.000087
ORF1ab/nsp3543S543StcTtcC11B.1.6210.000089